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linalg_blas.jl
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linalg_blas.jl
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# SUBROUTINE DCOPY(N,DX,INCX,DY,INCY)
for (fname, elty) in ((:dcopy_,:Float64), (:scopy_,:Float32),
(:zcopy_,:Complex128), (:ccopy_,:Complex64))
@eval begin
function _jl_blas_copy(n::Integer, DX::Union(Ptr{$elty},Array{$elty}), incx::Integer, DY::Union(Ptr{$elty},Array{$elty}), incy::Integer)
ccall(dlsym(_jl_libblas, $string(fname)),
Void,
(Ptr{Int32}, Ptr{$elty}, Ptr{Int32}, Ptr{$elty}, Ptr{Int32}),
&n, DX, &incx, DY, &incy)
return DY
end
end
end
function copy_to{T<:Union(Float64,Float32,Complex128,Complex64)}(dest::Ptr{T}, src::Ptr{T}, n::Integer)
if n < 200
_jl_blas_copy(n, src, 1, dest, 1)
else
ccall(:memcpy, Ptr{Void}, (Ptr{Void}, Ptr{Void}, Uint), dest, src, n*sizeof(T))
end
return dest
end
function copy_to{T<:Union(Float64,Float32,Complex128,Complex64)}(dest::Array{T}, src::Array{T})
n = numel(src)
if n < 200
_jl_blas_copy(n, src, 1, dest, 1)
else
ccall(:memcpy, Ptr{Void}, (Ptr{Void}, Ptr{Void}, Uint), dest, src, n*sizeof(T))
end
return dest
end
# DOUBLE PRECISION FUNCTION DDOT(N,DX,INCX,DY,INCY)
for (fname, elty) in ((:ddot_,:Float64), (:sdot_,:Float32))
@eval begin
function _jl_blas_dot(n::Integer, DX::Array{$elty}, incx::Integer,
DY::Array{$elty}, incy::Integer)
ccall(dlsym(_jl_libblas, $string(fname)),
$elty,
(Ptr{Int32}, Ptr{$elty}, Ptr{Int32}, Ptr{$elty}, Ptr{Int32}),
&n, DX, &incx, DY, &incy)
end
end
end
function dot{T<:Union(Vector{Float64}, Vector{Float32})}(x::T, y::T)
length(x) != length(y) ? error("Inputs should be of same length") : true
_jl_blas_dot(length(x), x, 1, y, 1)
end
# ccall is unable to return complex values (Issue #85)
#@blas_dot :zdotc_ Complex128
#@blas_dot :cdotc_ Complex64
# DOUBLE PRECISION FUNCTION DNRM2(N,X,INCX)
for (fname, elty, ret_type) in ((:dnrm2_,:Float64,:Float64),
(:snrm2_,:Float32,:Float32),
(:dznrm2_,:Complex128,:Float64),
(:scnrm2_,:Complex64,:Float32))
@eval begin
function _jl_blas_nrm2(n::Integer, X::Array{$elty}, incx::Integer)
ccall(dlsym(_jl_libblas, $string(fname)),
$ret_type,
(Ptr{Int32}, Ptr{$elty}, Ptr{Int32}),
&n, X, &incx)
end
end
end
norm{T<:Union(Float64,Float32,Complex128,Complex64)}(x::Vector{T}) =
_jl_blas_nrm2(length(x), x, 1)
# SUBROUTINE DAXPY(N,DA,DX,INCX,DY,INCY)
#* .. Scalar Arguments ..
# DOUBLE PRECISION DA
# INTEGER INCX,INCY,N
#* .. Array Arguments ..
# DOUBLE PRECISION DX(*),DY(*)
for (fname, elty) in ((:daxpy_,:Float64), (:saxpy_,:Float32),
(:zaxpy_,:Complex128), (:caxpy_,:Complex64))
@eval begin
function _jl_blas_axpy(n::Integer, x::($elty),
DA::Array{$elty}, incx::Integer, DY::Array{$elty}, incy::Integer)
ccall(dlsym(_jl_libblas, $string(fname)),
Void,
(Ptr{Int32}, Ptr{$elty}, Ptr{$elty}, Ptr{Int32}, Ptr{$elty}, Ptr{Int32}),
&n, x, DA, &incx, DY, &incy)
end
end
end
# SUBROUTINE DSYRK(UPLO,TRANS,N,K,ALPHA,A,LDA,BETA,C,LDC)
# * .. Scalar Arguments ..
# REAL ALPHA,BETA
# INTEGER K,LDA,LDC,N
# CHARACTER TRANS,UPLO
# * ..
# * .. Array Arguments ..
# REAL A(LDA,*),C(LDC,*)
for (fname, elty) in ((:dsyrk_,:Float64), (:ssyrk_,:Float32),
(:zsyrk_,:Complex128), (:csyrk_,:Complex64))
@eval begin
function _jl_blas_syrk(uplo, trans, n::Integer, k::Integer,
alpha::($elty), A::StridedMatrix{$elty}, lda::Integer,
beta::($elty), C::StridedMatrix{$elty}, ldc::Integer)
ccall(dlsym(_jl_libblas, $string(fname)),
Void,
(Ptr{Uint8}, Ptr{Uint8}, Ptr{Int32}, Ptr{Int32},
Ptr{$elty}, Ptr{$elty}, Ptr{Int32},
Ptr{$elty}, Ptr{$elty}, Ptr{Int32}),
&uplo, &trans, &n, &k,
&alpha, A, &lda,
&beta, C, &ldc)
end
end
end
# SUBROUTINE CHERK(UPLO,TRANS,N,K,ALPHA,A,LDA,BETA,C,LDC)
# * .. Scalar Arguments ..
# REAL ALPHA,BETA
# INTEGER K,LDA,LDC,N
# CHARACTER TRANS,UPLO
# * ..
# * .. Array Arguments ..
# COMPLEX A(LDA,*),C(LDC,*)
for (fname, elty) in ((:zherk_,:Complex128), (:cherk_,:Complex64))
@eval begin
function _jl_blas_herk(uplo, trans, n::Integer, k::Integer,
alpha::($elty), A::StridedMatrix{$elty}, lda::Integer,
beta::($elty), C::StridedMatrix{$elty}, ldc::Integer)
ccall(dlsym(_jl_libblas, $string(fname)),
Void,
(Ptr{Uint8}, Ptr{Uint8}, Ptr{Int32}, Ptr{Int32},
Ptr{$elty}, Ptr{$elty}, Ptr{Int32},
Ptr{$elty}, Ptr{$elty}, Ptr{Int32}),
&uplo, &trans, &n, &k,
&alpha, A, &lda,
&beta, C, &ldc)
end
end
end
# SUBROUTINE DGBMV(TRANS,M,N,KL,KU,ALPHA,A,LDA,X,INCX,BETA,Y,INCY)
# * .. Scalar Arguments ..
# DOUBLE PRECISION ALPHA,BETA
# INTEGER INCX,INCY,KL,KU,LDA,M,N
# CHARACTER TRANS
# * ..
# * .. Array Arguments ..
# DOUBLE PRECISION A(LDA,*),X(*),Y(*)
for (fname, elty) in ((:dgbmv_,:Float64), (:sgbmv_,:Float32),
(:zgbmv_,:Complex128), (:cgbmv_,:Complex64))
@eval begin
function _jl_blas_gbmv(trans, m::Integer, n::Integer, kl::Integer, ku::Integer,
alpha::($elty), A::StridedMatrix{$elty}, lda::Integer,
x::StridedVector{$elty}, incx::Integer,
beta::($elty), y::StridedVector{$elty}, incy::Integer)
ccall(dlsym(_jl_libblas, $string(fname)),
Void,
(Ptr{Uint8}, Ptr{Int32}, Ptr{Int32}, Ptr{Int32}, Ptr{Int32},
Ptr{$elty}, Ptr{$elty}, Ptr{Int32},
Ptr{$elty}, Ptr{Int32},
Ptr{$elty}, Ptr{$elty}, Ptr{Int32}),
&trans, &m, &n, &kl, &ku,
&alpha, A, &lda,
x, &incx,
&beta, y, &incy)
end
end
end
# SUBROUTINE DSBMV(UPLO,N,K,ALPHA,A,LDA,X,INCX,BETA,Y,INCY)
# * .. Scalar Arguments ..
# DOUBLE PRECISION ALPHA,BETA
# INTEGER INCX,INCY,K,LDA,N
# CHARACTER UPLO
# * ..
# * .. Array Arguments ..
# DOUBLE PRECISION A(LDA,*),X(*),Y(*)
for (fname, elty) in ((:dsbmv_,:Float64), (:ssbmv_,:Float32),
(:zsbmv_,:Complex128), (:csbmv_,:Complex64))
@eval begin
function _jl_blas_sbmv(uplo, n::Integer, k::Integer,
alpha::($elty), A::StridedMatrix{$elty}, lda::Integer,
x::StridedVector{$elty}, incx::Integer,
beta::($elty), y::StridedVector{$elty}, incy::Integer)
ccall(dlsym(_jl_libblas, $string(fname)),
Void,
(Ptr{Uint8}, Ptr{Int32}, Ptr{Int32},
Ptr{$elty}, Ptr{$elty}, Ptr{Int32},
Ptr{$elty}, Ptr{Int32},
Ptr{$elty}, Ptr{$elty}, Ptr{Int32}),
&uplo, &n, &k,
&alpha, A, &lda,
x, &incx,
&beta, y, &incy)
end
end
end
# SUBROUTINE DGEMM(TRANSA,TRANSB,M,N,K,ALPHA,A,LDA,B,LDB,BETA,C,LDC)
# * .. Scalar Arguments ..
# DOUBLE PRECISION ALPHA,BETA
# INTEGER K,LDA,LDB,LDC,M,N
# CHARACTER TRANSA,TRANSB
# * .. Array Arguments ..
# DOUBLE PRECISION A(LDA,*),B(LDB,*),C(LDC,*)
for (fname, elty) in ((:dgemm_,:Float64), (:sgemm_,:Float32),
(:zgemm_,:Complex128), (:cgemm_,:Complex64))
@eval begin
function _jl_blas_gemm(transA, transB, m::Integer, n::Integer, k::Integer,
alpha::($elty), A::StridedMatrix{$elty}, lda::Integer,
B::StridedMatrix{$elty}, ldb::Integer,
beta::($elty), C::StridedMatrix{$elty}, ldc::Integer)
ccall(dlsym(_jl_libblas, $string(fname)),
Void,
(Ptr{Uint8}, Ptr{Uint8}, Ptr{Int32}, Ptr{Int32}, Ptr{Int32},
Ptr{$elty}, Ptr{$elty}, Ptr{Int32},
Ptr{$elty}, Ptr{Int32},
Ptr{$elty}, Ptr{$elty}, Ptr{Int32}),
&transA, &transB, &m, &n, &k,
&alpha, A, &lda,
B, &ldb,
&beta, C, &ldc)
end
end
end
function (*){T<:Union(Float64,Float32,Complex128,Complex64)}(A::StridedMatrix{T},
B::StridedMatrix{T})
_jl_gemm('N', 'N', A, B)
end
function At_mul_B{T<:Union(Float64,Float32,Complex128,Complex64)}(A::StridedMatrix{T},
B::StridedMatrix{T})
if is(A, B) && size(A,1)>=500
_jl_syrk('T', A)
else
_jl_gemm('T', 'N', A, B)
end
end
function A_mul_Bt{T<:Union(Float64,Float32,Complex128,Complex64)}(A::StridedMatrix{T},
B::StridedMatrix{T})
if is(A, B) && size(A,2)>=500
_jl_syrk('N', A)
else
_jl_gemm('N', 'T', A, B)
end
end
function At_mul_Bt{T<:Union(Float64,Float32,Complex128,Complex64)}(A::StridedMatrix{T},
B::StridedMatrix{T})
_jl_gemm('T', 'T', A, B)
end
Ac_mul_B{T<:Union(Float64,Float32)}(A::StridedMatrix{T}, B::StridedMatrix{T}) = At_mul_B(A, B)
function Ac_mul_B{T<:Union(Complex128,Complex64)}(A::StridedMatrix{T},
B::StridedMatrix{T})
if is(A, B) && size(A,1)>=500
_jl_herk('C', A)
else
_jl_gemm('C', 'N', A, B)
end
end
A_mul_Bc{T<:Union(Float64,Float32)}(A::StridedMatrix{T}, B::StridedMatrix{T}) = A_mul_Bt(A, B)
function A_mul_Bc{T<:Union(Complex128,Complex64)}(A::StridedMatrix{T},
B::StridedMatrix{T})
if is(A, B) && size(A,2)>=500
_jl_herk('N', A)
else
_jl_gemm('N', 'C', A, B)
end
end
function Ac_mul_Bc{T<:Union(Float64,Float32,Complex128,Complex64)}(A::StridedMatrix{T},
B::StridedMatrix{T})
_jl_gemm('C', 'C', A, B)
end
function _jl_copy_upper_to_lower(A::StridedMatrix)
n = size(A, 1)
for i = 1:n-1
for j = i+1:n
A[j, i] = A[i, j]
end
end
end
function _jl_syrk{T<:Union(Float64,Float32,Complex128,Complex64)}(tA,
A::StridedMatrix{T})
if tA == 'T'
(nA, mA) = size(A)
tAt = 'N'
else
(mA, nA) = size(A)
tAt = 'T'
end
if mA == 2 && nA == 2; return matmul2x2(tA,tAt,A,A); end
if mA == 3 && nA == 3; return matmul3x3(tA,tAt,A,A); end
if stride(A, 1) != 1
if tA == 'T'
return _jl_generic_matmatmul(A.', A)
else
return _jl_generic_matmatmul(A, A.')
end
end
# Result array does not need to be initialized as long as beta==0
C = Array(T, mA, mA)
_jl_blas_syrk('U', tA, mA, nA,
one(T), A, stride(A, 2),
zero(T), C, mA)
_jl_copy_upper_to_lower(C)
return C
end
function _jl_copy_upper_to_lower_conj(A::StridedMatrix)
n = size(A, 1)
for i = 1:n-1
for j = i+1:n
A[j, i] = conj(A[i, j])
end
end
end
function _jl_herk{T<:Union(Float64,Float32,Complex128,Complex64)}(tA,
A::StridedMatrix{T})
if tA == 'C'
(nA, mA) = size(A)
tAt = 'N'
else
(mA, nA) = size(A)
tAt = 'C'
end
if mA == 2 && nA == 2; return matmul2x2(tA,tAt,A,A); end
if mA == 3 && nA == 3; return matmul3x3(tA,tAt,A,A); end
if stride(A, 1) != 1
if tA == 'C'
return _jl_generic_matmatmul(A', A)
else
return _jl_generic_matmatmul(A, A')
end
end
# Result array does not need to be initialized as long as beta==0
C = Array(T, mA, mA)
_jl_blas_herk('U', tA, mA, nA,
one(T), A, stride(A, 2),
zero(T), C, mA)
_jl_copy_upper_to_lower_conj(C)
return C
end
function _jl_gemm{T<:Union(Float64,Float32,Complex128,Complex64)}(tA, tB,
A::StridedMatrix{T},
B::StridedMatrix{T})
if tA != 'N'
(nA, mA) = size(A)
else
(mA, nA) = size(A)
end
if tB != 'N'
(nB, mB) = size(B)
else
(mB, nB) = size(B)
end
if nA != mB; error("*: argument shapes do not match"); end
if mA == 2 && nA == 2 && nB == 2; return matmul2x2(tA,tB,A,B); end
if mA == 3 && nA == 3 && nB == 3; return matmul3x3(tA,tB,A,B); end
if stride(A, 1) != 1 || stride(B, 1) != 1
if tA == 'T'
A = A.'
elseif tA == 'C'
A = A'
end
if tB == 'T'
B = B.'
elseif tB == 'C'
B = B'
end
return _jl_generic_matmatmul(A, B)
end
# Result array does not need to be initialized as long as beta==0
C = Array(T, mA, nB)
_jl_blas_gemm(tA, tB, mA, nB, nA,
one(T), A, stride(A, 2),
B, stride(B, 2),
zero(T), C, mA)
return C
end
#SUBROUTINE DGEMV(TRANS,M,N,ALPHA,A,LDA,X,INCX,BETA,Y,INCY)
#* .. Scalar Arguments ..
# DOUBLE PRECISION ALPHA,BETA
# INTEGER INCX,INCY,LDA,M,N
# CHARACTER TRANS
#* .. Array Arguments ..
# DOUBLE PRECISION A(LDA,*),X(*),Y(*)
for (fname, elty) in ((:dgemv_,:Float64), (:sgemv_,:Float32),
(:zgemv_,:Complex128), (:cgemv_,:Complex64))
@eval begin
function _jl_blas_gemv(trans, m::Integer, n::Integer,
alpha::($elty), A::StridedMatrix{$elty}, lda::Integer,
X::StridedVector{$elty}, incx::Integer,
beta::($elty), Y::StridedVector{$elty}, incy::Integer)
ccall(dlsym(_jl_libblas, $string(fname)),
Void,
(Ptr{Uint8}, Ptr{Int32}, Ptr{Int32},
Ptr{$elty}, Ptr{$elty}, Ptr{Int32},
Ptr{$elty}, Ptr{Int32},
Ptr{$elty}, Ptr{$elty}, Ptr{Int32}),
trans, &m, &n,
&alpha, A, &lda,
X, &incx,
&beta, Y, &incy)
end
end
end
# TODO: support transposed arguments
function (*){T<:Union(Float64,Float32,Complex128,Complex64)}(A::StridedMatrix{T},
X::StridedVector{T})
(mA, nA) = size(A)
mX = size(X, 1)
if nA != mX; error("*: argument shapes do not match"); end
if stride(A, 1) != 1
return _jl_generic_matvecmul(A, X)
end
# Result array does not need to be initialized as long as beta==0
Y = Array(T, mA)
_jl_blas_gemv("N", mA, nA,
one(T), A, stride(A, 2),
X, stride(X, 1),
zero(T), Y, 1)
return Y
end