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Segmentation fault in GC #27952

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PetrKryslUCSD opened this issue Jul 6, 2018 · 19 comments
Closed

Segmentation fault in GC #27952

PetrKryslUCSD opened this issue Jul 6, 2018 · 19 comments
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kind:bug Indicates an unexpected problem or unintended behavior

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@PetrKryslUCSD
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PetrKryslUCSD commented Jul 6, 2018 •
edited by KristofferC 

Please submit a bug report with steps to reproduce this fault, and any error messages that follow (in their entirety). Thanks.
Exception: EXCEPTION_ACCESS_VIOLATION at 0x6b5e158a -- gc_try_setmark at /home/Administrator/buildbot/worker/package_win64/build/src\gc.c:1424 [inlined]
gc_mark_loop at /home/Administrator/buildbot/worker/package_win64/build/src\gc.c:1868
in expression starting at no file:0
gc_try_setmark at /home/Administrator/buildbot/worker/package_win64/build/src\gc.c:1421 [inlined]
gc_mark_loop at /home/Administrator/buildbot/worker/package_win64/build/src\gc.c:1868
_jl_gc_collect at /home/Administrator/buildbot/worker/package_win64/build/src\gc.c:2468
jl_gc_collect at /home/Administrator/buildbot/worker/package_win64/build/src\gc.c:2633
jl_gc_pool_alloc at /home/Administrator/buildbot/worker/package_win64/build/src\gc.c:953
jl_gc_alloc_ at /home/Administrator/buildbot/worker/package_win64/build/src\julia_internal.h:274 [inlined]
_new_array_ at /home/Administrator/buildbot/worker/package_win64/build/src\array.c:106 [inlined]
_new_array at /home/Administrator/buildbot/worker/package_win64/build/src\array.c:151 [inlined]
jl_alloc_array_1d at /home/Administrator/buildbot/worker/package_win64/build/src\array.c:411
Type at .\boot.jl:394 [inlined]
sparse at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v0.7\SparseArrays\src\sparsematrix.jl:542
unknown function (ip: 000000001A6209CE)
jl_invoke at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:42
sparse at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v0.7\SparseArrays\src\sparsematrix.jl:737 [inlined]
makematrix! at C:\Users\PetrKrysl\.julia\dev\FinEtools\src\AssemblyModule.jl:215
stiffness at C:\Users\PetrKrysl\.julia\dev\FinEtools\src\FEMMDeforLinearMSModule.jl:278
stiffness at C:\Users\PetrKrysl\.julia\dev\FinEtools\src\FEMMDeforLinearBaseModule.jl:130 [inlined]
LE10NAFEMS_MST10_stresses_nodal at c:\Users\PetrKrysl\.julia\dev\FinEtools\examples\deformation_linear\statics\3-d\LE10NAFEMS_examples.jl:2684
allrun at c:\Users\PetrKrysl\.julia\dev\FinEtools\examples\deformation_linear\statics\3-d\LE10NAFEMS_examples.jl:2853
unknown function (ip: 0000000006800253)
jl_fptr_trampoline at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:1813
jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2151
do_call at /home/Administrator/buildbot/worker/package_win64/build/src\interpreter.c:324
eval_value at /home/Administrator/buildbot/worker/package_win64/build/src\interpreter.c:428
eval_stmt_value at /home/Administrator/buildbot/worker/package_win64/build/src\interpreter.c:363 [inlined]
eval_body at /home/Administrator/buildbot/worker/package_win64/build/src\interpreter.c:675
jl_interpret_toplevel_thunk_callback at /home/Administrator/buildbot/worker/package_win64/build/src\interpreter.c:792
unknown function (ip: FFFFFFFFFFFFFFFE)
unknown function (ip: 0000000013EC19FF)
unknown function (ip: 0000000000000001)
jl_toplevel_eval_flex at /home/Administrator/buildbot/worker/package_win64/build/src\toplevel.c:814
jl_toplevel_eval_in at /home/Administrator/buildbot/worker/package_win64/build/src\builtins.c:633
eval at .\boot.jl:319 [inlined]
eval at .\meta.jl:6 [inlined]
runexamples at C:\Users\PetrKrysl\.julia\dev\FinEtools\examples\runexamples.jl:18
jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2151
do_call at /home/Administrator/buildbot/worker/package_win64/build/src\interpreter.c:324
eval_value at /home/Administrator/buildbot/worker/package_win64/build/src\interpreter.c:428
eval_stmt_value at /home/Administrator/buildbot/worker/package_win64/build/src\interpreter.c:363 [inlined]
eval_body at /home/Administrator/buildbot/worker/package_win64/build/src\interpreter.c:675
jl_interpret_toplevel_thunk_callback at /home/Administrator/buildbot/worker/package_win64/build/src\interpreter.c:792
unknown function (ip: FFFFFFFFFFFFFFFE)
unknown function (ip: 0000000014F6C05F)
unknown function (ip: FFFFFFFFFFFFFFFF)
jl_toplevel_eval_flex at /home/Administrator/buildbot/worker/package_win64/build/src\toplevel.c:814
jl_toplevel_eval_in at /home/Administrator/buildbot/worker/package_win64/build/src\builtins.c:633
eval at .\boot.jl:319
jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2151
eval_user_input at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v0.7\REPL\src\REPL.jl:85
macro expansion at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v0.7\REPL\src\REPL.jl:116 [inlined]
#28 at .\task.jl:257
jl_fptr_trampoline at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:1813
jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2151
jl_apply at /home/Administrator/buildbot/worker/package_win64/build/src\julia.h:1532 [inlined]
start_task at /home/Administrator/buildbot/worker/package_win64/build/src\task.c:268
Allocations: 19149249538 (Pool: 19146721966; Big: 2527572); GC: 64755
@JeffBezanson
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Are you able to provide steps that reproduce this?

@PetrKryslUCSD
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Unfortunately, no. It occurred after a long line of computation triggered after some REPL work. Sorry.

@PetrKryslUCSD
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I managed to produce a repeatable series of steps to generate this error. My environment:

$ export JULIA_NUM_THREADS=4; ~/AppData/Local/Julia-0.7.0-beta/bin/julia
               _
   _       _ _(_)_     |  A fresh approach to technical computing
  (_)     | (_) (_)    |  Documentation: https://docs.julialang.org
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 0.7.0-beta.108 (2018-07-01 22:57 UTC)
 _/ |\__'_|_|_|\__'_|  |  Commit 3ac99765de (4 days old master)
|__/                   |  x86_64-w64-mingw32
julia> versioninfo()
Julia Version 0.7.0-beta.108
Commit 3ac99765de (2018-07-01 22:57 UTC)
Platform Info:
  OS: Windows (x86_64-w64-mingw32)
  CPU: Intel(R) Core(TM) i7-6650U CPU @ 2.20GHz
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-6.0.0 (ORCJIT, skylake)
Environment:
  JULIA_NUM_THREADS = 4

I ran:

(v0.7) pkg> add https://github.com/PetrKryslUCSD/FinEtools.jl.git

And then:

shell> cd ../.julia/packages\\FinEtools\\ZvnG\\examples\\deformation_linear\\statics\\3-d\\
C:\Users\PetrKrysl\.julia\packages\FinEtools\ZvnG\examples\deformation_linear\statics\3-d

julia> include("LE10NAFEMS_examples.jl"); LE10NAFEMS_examples.LE10NAFEMS_MST10_stresses_nodal()

The output is (to get to this point takes several minutes):

julia> include("LE10NAFEMS_examples.jl"); LE10NAFEMS_examples.LE10NAFEMS_MST10_stresses_nodal()
LE10NAFEMS, 3D version. Element: MST10
displacement =[-0.0277575 0.0 -0.0980201] [MM] as compared to reference [-0.030939, 0, -0.10488] [MM]
displacement =[-0.0274042 0.0 -0.0994613] [MM] as compared to reference [-0.030939, 0, -0.10488] [MM]
displacement =[-0.0274393 0.0 -0.101249] [MM] as compared to reference [-0.030939, 0, -0.10488] [MM]
displacement =[-0.0274871 0.0 -0.103116] [MM] as compared to reference [-0.030939, 0, -0.10488] [MM]

RMS error
Normalized Approximate Error = [0.169739, 0.150143, 0.150013]
Linear log-log fit: p = [0.0891166, -1.79379]
Wrote LE10NAFEMS_MST10_stresses_nodal_extraptrend_Stress.CSV
displacement =[-0.0277575 0.0 -0.0980201] [MM] as compared to reference [-0.030939, 0, -0.10488] [MM]

Please submit a bug report with steps to reproduce this fault, and any error messages that follow (in their entirety). Thanks.
Exception: EXCEPTION_ACCESS_VIOLATION at 0x6b5e199f -- gc_try_setmark at /home/Administrator/buildbot/worker/package_win64/build/src\gc.c:1424 [inlined]
gc_mark_scan_obj8 at /home/Administrator/buildbot/worker/package_win64/build/src\gc.c:1550 [inlined]
gc_mark_loop at /home/Administrator/buildbot/worker/package_win64/build/src\gc.c:1814
in expression starting at no file:0
gc_try_setmark at /home/Administrator/buildbot/worker/package_win64/build/src\gc.c:1421 [inlined]
gc_mark_scan_obj8 at /home/Administrator/buildbot/worker/package_win64/build/src\gc.c:1550 [inlined]
gc_mark_loop at /home/Administrator/buildbot/worker/package_win64/build/src\gc.c:1814
_jl_gc_collect at /home/Administrator/buildbot/worker/package_win64/build/src\gc.c:2468
jl_gc_collect at /home/Administrator/buildbot/worker/package_win64/build/src\gc.c:2633
jl_gc_pool_alloc at /home/Administrator/buildbot/worker/package_win64/build/src\gc.c:953
Type at .\compiler/ssair\ir.jl:222 [inlined]
userefs at .\compiler/ssair\ir.jl:335 [inlined]
ssamap at .\compiler/ssair\ir.jl:378
renumber_ssa! at .\compiler/ssair\slot2ssa.jl:74 [inlined]
renumber_ssa! at .\compiler/ssair\slot2ssa.jl:73
jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2151
construct_ssa! at .\compiler/ssair\slot2ssa.jl:855
just_construct_ssa at .\compiler/ssair\driver.jl:109
run_passes at .\compiler/ssair\driver.jl:114
optimize at .\compiler\optimize.jl:145
typeinf at .\compiler\typeinfer.jl:35
typeinf_ext at .\compiler\typeinfer.jl:567
typeinf_ext at .\compiler\typeinfer.jl:604
jfptr_typeinf_ext_10.clone_1 at C:\Users\PetrKrysl\AppData\Local\Julia-0.7.0-beta\lib\julia\sys.dll (unknown line)
jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2151
jl_apply at /home/Administrator/buildbot/worker/package_win64/build/src\julia.h:1532 [inlined]
jl_apply_with_saved_exception_state at /home/Administrator/buildbot/worker/package_win64/build/src\rtutils.c:257
jl_type_infer at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:274
jl_compile_method_internal at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:1768 [inlined]
jl_fptr_trampoline at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:1812
jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2151 [inlined]
jl_apply at /home/Administrator/buildbot/worker/package_win64/build/src\julia.h:1532 [inlined]
jl_invoke at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:56
#_iip_meanonly at .\none:0 [inlined]
#inspectintegpoints#4 at C:\Users\PetrKrysl\.julia\packages\FinEtools\ZvnG\src\FEMMDeforLinearMSModule.jl:642
jl_invoke at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:42
#fieldfromintegpoints#18 at .\none:0
jl_invoke at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:42
LE10NAFEMS_MST10_stresses_nodal at .\none:0
jl_fptr_trampoline at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:1813
jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2151
do_call at /home/Administrator/buildbot/worker/package_win64/build/src\interpreter.c:324
eval_value at /home/Administrator/buildbot/worker/package_win64/build/src\interpreter.c:428
eval_stmt_value at /home/Administrator/buildbot/worker/package_win64/build/src\interpreter.c:363 [inlined]eval_body at /home/Administrator/buildbot/worker/package_win64/build/src\interpreter.c:675
jl_interpret_toplevel_thunk_callback at /home/Administrator/buildbot/worker/package_win64/build/src\interpreter.c:792
unknown function (ip: FFFFFFFFFFFFFFFE)
unknown function (ip: 000000001415299F)
unknown function (ip: 0000000000000000)
jl_toplevel_eval_flex at /home/Administrator/buildbot/worker/package_win64/build/src\toplevel.c:814
jl_toplevel_eval_flex at /home/Administrator/buildbot/worker/package_win64/build/src\toplevel.c:762
jl_toplevel_eval_in at /home/Administrator/buildbot/worker/package_win64/build/src\builtins.c:633
eval at .\boot.jl:319
jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2151
eval_user_input at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v0.7\REPL\src\REPL.jl:85
macro expansion at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v0.7\REPL\src\REPL.jl:116 [inlined]
#28 at .\task.jl:257
jl_fptr_trampoline at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:1813
jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2151
jl_apply at /home/Administrator/buildbot/worker/package_win64/build/src\julia.h:1532 [inlined]
start_task at /home/Administrator/buildbot/worker/package_win64/build/src\task.c:268
Allocations: 1172908930 (Pool: 1172606683; Big: 302247); GC: 4166

@PetrKryslUCSD
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The crash does not appear to be related to the number of threads. The same error is reported when I force the number of threads to be 1.

@KristofferC
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KristofferC commented Jul 6, 2018 •
edited

FWIW, it ran successfully on my Mac with julia-beta:

julia> include("LE10NAFEMS_examples.jl"); LE10NAFEMS_examples.LE10NAFEMS_MST10_stresses_nodal()
LE10NAFEMS, 3D version. Element: MST10
displacement =[-0.0277575 0.0 -0.0980201] [MM] as compared to reference [-0.030939, 0, -0.10488] [MM]
displacement =[-0.0274042 0.0 -0.0994613] [MM] as compared to reference [-0.030939, 0, -0.10488] [MM]
displacement =[-0.0274393 0.0 -0.101249] [MM] as compared to reference [-0.030939, 0, -0.10488] [MM]
displacement =[-0.0274871 0.0 -0.103116] [MM] as compared to reference [-0.030939, 0, -0.10488] [MM]

RMS error
Normalized Approximate Error = [0.169739, 0.150143, 0.150013]
Linear log-log fit: p = [0.0891166, -1.79379]
Wrote LE10NAFEMS_MST10_stresses_nodal_extraptrend_Stress.CSV
displacement =[-0.0277575 0.0 -0.0980201] [MM] as compared to reference [-0.030939, 0, -0.10488] [MM]
displacement =[-0.0274042 0.0 -0.0994613] [MM] as compared to reference [-0.030939, 0, -0.10488] [MM]
displacement =[-0.0274393 0.0 -0.101249] [MM] as compared to reference [-0.030939, 0, -0.10488] [MM]
displacement =[-0.0274871 0.0 -0.103116] [MM] as compared to reference [-0.030939, 0, -0.10488] [MM]

RMS error
Normalized Approximate Error = [0.242268, 0.13594, 0.121928]
Linear log-log fit: p = [0.495287, -1.49588]
Wrote LE10NAFEMS_MST10_stresses_nodal_extrapmean_Stress.CSV

@PetrKryslUCSD
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I suspect this issue is really an instance of this bug.
The code in this example invokes eval and parse via the PhysicalUnitModule function phun.

@JeffBezanson JeffBezanson added the kind:bug Indicates an unexpected problem or unintended behavior label Jul 23, 2018
@JeffBezanson JeffBezanson mentioned this issue Jul 24, 2018
Closed
@Keno
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Keno commented Jul 28, 2018

Can you check if the fix for #27955 fixed this one also?

@PetrKryslUCSD
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PetrKryslUCSD commented Jul 31, 2018 •
edited

EDIT: This might be the same issue.
EDIT 2: Still happening w/ rc1.
@Keno : This is the result of running with the latest master on Windows:

julia> include("LE10NAFEMS_examples.jl"); LE10NAFEMS_examples.LE10NAFEMS_MST10_stresses_nodal()
LE10NAFEMS, 3D version. Element: MST10
displacement =[-0.0277575 0.0 -0.0980201] [MM] as compared to reference [-0.030939, 0, -0.10488] [MM]
Illegal inttoptr
          %45 = ptrtoint double addrspace(13)* %44 to i64
Illegal inttoptr
          %60 = inttoptr i64 %59 to i8 addrspace(13)*

signal (22): SIGABRT
in expression starting at no file:0
crt_sig_handler at /home/Administrator/buildbot/worker/package_win64/build/src/home/Administrator/buildbot/worker/package_win64/build/src\signals-win.c:92
raise at C:\WINDOWS\System32\msvcrt.dll (unknown line)
abort at C:\WINDOWS\System32\msvcrt.dll (unknown line)
runOnFunction at /home/Administrator/buildbot/worker/package_win64/build/src/home/Administrator/buildbot/worker/package_win64/build/src\llvm-gc-invariant-verifier.cpp:178
_ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at C:\Users\PetrKrysl\AppData\Local\Julia-0.7.0-beta2\bin\LLVM.dll (unknown line)
_ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at C:\Users\PetrKrysl\AppData\Local\Julia-0.7.0-beta2\bin\LLVM.dll (unknown line)
_ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at C:\Users\PetrKrysl\AppData\Local\Julia-0.7.0-beta2\bin\LLVM.dll (unknown line)
operator() at /home/Administrator/buildbot/worker/package_win64/build/src/home/Administrator/buildbot/worker/package_win64/build/src\jitlayers.cpp:486
addModule at /home/Administrator/buildbot/worker/package_win64/build/src/home/Administrator/buildbot/worker/package_win64/build/usr/include/llvm/ExecutionEngine/Orc\IRCompileLayer.h:57 [inlined]
addModule at /home/Administrator/buildbot/worker/package_win64/build/src/home/Administrator/buildbot/worker/package_win64/build/src\jitlayers.cpp:613
jl_add_to_ee at /home/Administrator/buildbot/worker/package_win64/build/src/home/Administrator/buildbot/worker/package_win64/build/src\jitlayers.cpp:860 [inlined]
jl_finalize_function at /home/Administrator/buildbot/worker/package_win64/build/src/home/Administrator/buildbot/worker/package_win64/build/src\jitlayers.cpp:868
getAddressForFunction at /home/Administrator/buildbot/worker/package_win64/build/src/home/Administrator/buildbot/worker/package_win64/build/src\codegen.cpp:1300
jl_generate_fptr at /home/Administrator/buildbot/worker/package_win64/build/src/home/Administrator/buildbot/worker/package_win64/build/src\codegen.cpp:1411
jl_compile_method_internal at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:1804 [inlined]
jl_fptr_trampoline at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:1811
jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2165 [inlined]
jl_apply at /home/Administrator/buildbot/worker/package_win64/build/src\julia.h:1538 [inlined]
jl_invoke at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:56
#inspectintegpoints#4 at .\none:0
jl_fptr_trampoline at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:1812
jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2165 [inlined]
jl_apply at /home/Administrator/buildbot/worker/package_win64/build/src\julia.h:1538 [inlined]
jl_invoke at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:56
#fieldfromintegpoints#18 at .\none:0
jl_fptr_trampoline at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:1812
jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2165 [inlined]
jl_apply at /home/Administrator/buildbot/worker/package_win64/build/src\julia.h:1538 [inlined]
jl_invoke at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:56
#fieldfromintegpoints#20 at .\none:0
jl_fptr_trampoline at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:1812
jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2165 [inlined]
jl_apply at /home/Administrator/buildbot/worker/package_win64/build/src\julia.h:1538 [inlined]
jl_invoke at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:56
LE10NAFEMS_MST10_stresses_nodal at .\none:0
jl_fptr_trampoline at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:1812
jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2165
do_call at /home/Administrator/buildbot/worker/package_win64/build/src\interpreter.c:324
eval_value at /home/Administrator/buildbot/worker/package_win64/build/src\interpreter.c:428
eval_stmt_value at /home/Administrator/buildbot/worker/package_win64/build/src\interpreter.c:363 [inlined]
eval_body at /home/Administrator/buildbot/worker/package_win64/build/src\interpreter.c:682
jl_interpret_toplevel_thunk_callback at /home/Administrator/buildbot/worker/package_win64/build/src\interpreter.c:799
unknown function (ip: FFFFFFFFFFFFFFFE)
unknown function (ip: 000000000F2EF6BF)
unknown function (ip: 0000000000000000)
jl_toplevel_eval_flex at /home/Administrator/buildbot/worker/package_win64/build/src\toplevel.c:831
jl_toplevel_eval_flex at /home/Administrator/buildbot/worker/package_win64/build/src\toplevel.c:778
jl_toplevel_eval_in at /home/Administrator/buildbot/worker/package_win64/build/src\builtins.c:633
eval at .\boot.jl:319
jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2165
eval_user_input at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v0.7\REPL\src\REPL.jl:87
macro expansion at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v0.7\REPL\src\REPL.jl:119 [inlined]
#28 at .\task.jl:262
jl_fptr_trampoline at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:1812
jl_apply_generic at /home/Administrator/buildbot/worker/package_win64/build/src\gf.c:2165
jl_apply at /home/Administrator/buildbot/worker/package_win64/build/src\julia.h:1538 [inlined]
start_task at /home/Administrator/buildbot/worker/package_win64/build/src\task.c:268
Allocations: 47248058 (Pool: 47238769; Big: 9289); GC: 105

@JeffBezanson
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Also try rebuilding llvm (make -C deps distclean-llvm, make) if you haven't recently; that issue might be fixed by a recent llvm patch.

@Keno
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Keno commented Jul 31, 2018

Probably ideally wait until #28362 is merged first.

@JeffBezanson
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Now worth checking this again.

@PetrKryslUCSD
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I tried with Commit a83dfee (Windows 10).

Illegal inttoptr
          %42 = ptrtoint double addrspace(13)* %41 to i64
Illegal inttoptr
          %57 = inttoptr i64 %56 to i8 addrspace(13)*

@Keno
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Keno commented Aug 2, 2018

We had just merged another one of these when @JeffBezanson, so please try with a more recent version.

@StefanKarpinski
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E.g. the new 0.7.0-rc2 that was just tagged (no binaries yet, so you'll have to build it).

@PetrKryslUCSD
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Can I get a binary with this change implemented? I'm on the road and I cannot build it myself.

@cdluminate
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I encountered a similar failure during build.

Statistics  ─────  0.337505 seconds
Stdlibs total  ── 67.593087 seconds
Sysimage built. Summary:
Total ───────  91.865412 seconds 
Base: ───────  24.270893 seconds 26.4201%
Stdlibs: ────  67.593087 seconds 73.5784%
make[3]: Leaving directory '/home/lumin/packages/julia.pkg/julia'
make[3]: Entering directory '/home/lumin/packages/julia.pkg/julia'
 cd /home/lumin/packages/julia.pkg/julia/base && if ! /home/lumin/packages/julia.pkg/julia/usr/bin/julia -O3 -C "x86-64" --output-o /home/lumin/packages/julia.pkg/julia/usr/lib/x86_64-linux-gnu/julia/sys-o.a.tmp  --startup-file=no --warn-overwrite=yes --sysimage /home/lumin/packages/julia.pkg/julia/usr/lib/x86_64-linux-gnu/julia/sys.ji /home/lumin/packages/julia.pkg/julia/contrib/generate_precompile.jl /home/lumin/packages/julia.pkg/julia/usr/lib/x86_64-linux-gnu/julia/sys.ji; then echo '*** This error is usually fixed by running `make clean`. If the error persists, try `make cleanall`. ***'; false; fi 
Generating precompile statements... 751 generated in  29.793997 seconds
Illegal inttoptr
	  %scevgep9 = ptrtoint i32 addrspace(13)* %scevgep to i64
Illegal inttoptr
	  %scevgep1011 = ptrtoint i32 addrspace(13)* %scevgep10 to i64

signal (6): Aborted
in expression starting at no file:0
gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
runOnFunction at ./src/./src/llvm-gc-invariant-verifier.cpp:178
_ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /usr/lib/x86_64-linux-gnu/libLLVM-6.0.so.1 (unknown line)
_ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /usr/lib/x86_64-linux-gnu/libLLVM-6.0.so.1 (unknown line)
_ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /usr/lib/x86_64-linux-gnu/libLLVM-6.0.so.1 (unknown line)
operator() at ./src/./src/jitlayers.cpp:1182 [inlined]
jl_dump_native at ./src/./src/jitlayers.cpp:1191
jl_write_compiler_output at ./src/./src/precompile.c:84
jl_atexit_hook at ./src/./src/init.c:233
main at ./ui/./ui/repl.c:234
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
_start at /home/lumin/packages/julia.pkg/julia/usr/bin/julia (unknown line)
Allocations: 56992005 (Pool: 56981963; Big: 10042); GC: 124
Aborted
*** This error is usually fixed by running `make clean`. If the error persists, try `make cleanall`. ***
make[3]: *** [Makefile:216: /home/lumin/packages/julia.pkg/julia/usr/lib/x86_64-linux-gnu/julia/sys-o.a] Error 1
make[3]: Leaving directory '/home/lumin/packages/julia.pkg/julia'
make[2]: *** [Makefile:78: julia-sysimg-release] Error 2
make[2]: Leaving directory '/home/lumin/packages/julia.pkg/julia'
dh_auto_build: make -j4 "INSTALL=install --strip-program=true" prefix=/usr sysconfdir=/etc DESTDIR=debian/tmp/ LLVM_CONFIG=/usr/bin/llvm-config-6.0 LLVM_VER=6.0 MULTIARCH=x86_64-linux-gnu MULTIARCH_INSTALL=1 NO_GIT=1 "TAGGED_RELEASE_BANNER=Debian ⛬  julia/0.7.0~rc2-1" USE_BLAS64=0 USE_LLVM_SHLIB=1 USE_SYSTEM_BLAS=1 USE_SYSTEM_CURL=1 USE_SYSTEM_DSFMT=1 USE_SYSTEM_FFTW=1 USE_SYSTEM_GMP=1 USE_SYSTEM_LAPACK=1 USE_SYSTEM_LIBGIT2=1 USE_SYSTEM_LIBSSH2=1 USE_SYSTEM_LIBUNWIND=1 USE_SYSTEM_LIBUV=0 USE_SYSTEM_LLVM=1 USE_SYSTEM_MBEDTLS=1 USE_SYSTEM_MPFR=1 USE_SYSTEM_OPENSPECFUN=1 USE_SYSTEM_PATCHELF=1 USE_SYSTEM_PCRE=1 USE_SYSTEM_SUITESPARSE=1 USE_SYSTEM_UTF8PROC=1 VERBOSE=1 MARCH=x86-64 USE_SYSTEM_OPENLIBM=1 USE_SYSTEM_LIBM=0 LIBBLAS=-lopenblas LIBBLASNAME=libopenblas LIBLAPACK=-lopenblas LIBLAPACKNAME=libopenblas returned exit code 2
make[1]: *** [debian/rules:114: override_dh_auto_build] Error 2
make[1]: Leaving directory '/home/lumin/packages/julia.pkg/julia'
make: *** [debian/rules:106: build] Error 2
dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
debuild: fatal error at line 1152:
dpkg-buildpackage -rfakeroot -us -uc -ui -i -j4 failed

julia version 0.7.0~rc2, gcc version gcc (Debian 8.1.0-9) 8.1.0, llvm version 1:6.0.1-2, system is Debian unstable.

@StefanKarpinski
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This was with the system LLVM, not with Julia’s patched one? That’s not really supported. You get what you get if you don’t use our LLVM.

@PetrKryslUCSD
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@JeffBezanson , @Keno , @StefanKarpinski : rc2 fixed this bug (only Win 10 tested so far).

@Keno Keno closed this as completed Aug 3, 2018
@cdluminate
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@StefanKarpinski That failure comes from Debian's llvm-6.0 . I guess it misses this patch.

NLaws pushed a commit to NREL/REopt_API that referenced this issue May 7, 2021
Julia image Debian->Alpine
21ca652 
trying to fix Garbage Collect segfault, maybe related to JuliaLang/julia#27952
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@StefanKarpinski @JeffBezanson @KristofferC @Keno @cdluminate @PetrKryslUCSD