precompilation errors with SymbolicsForwardDiffExt and SymbolicsPreallocationToolsExt #1042
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j-fu
added a commit
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Jan 23, 2024
due to JuliaSymbolics/Symbolics.jl#1042 and JuliaSymbolics/Symbolics.jl@eacd116 Upgrade ExtendableSparse to 1.3
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I've been trying to figure out what's going on here, JuliaLang/julia#52511 looks indeed like the issue. Though I'm not sure we can do anything about that other than wait for the patch. |
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I thought it was the same issue also, but I'm less confident after testing the latest nightly which I believe includes a patch for JuliaLang/julia#52132 . On Julia Version 1.10.0 (2023-12-25) both Symbolics (v5.16.1) and AccessorsExtra (v0.1.65) error on precompilation. On the latest nightly Julia Version 1.11.0-DEV.1420 (2024-01-30), only Symbolics has the precompilation error. Error below: Precompiling project...
107 dependencies successfully precompiled in 55 seconds. 32 already precompiled.
2 dependencies had output during precompilation:
┌ Symbolics → SymbolicsForwardDiffExt
│ ┌ Warning: Module SymbolicsForwardDiffExt with build ID ffffffff-ffff-ffff-0000-3ed4cb751c5c is missing from the cache.
│ │ This may mean SymbolicsForwardDiffExt [4a213a23-c09c-5cde-9712-b631ad2c72df] does not support precompilation but is imported by a module that does.
│ └ @ Base loading.jl:2121
│ ┌ Error: Error during loading of extension SymbolicsForwardDiffExt of Symbolics, use `Base.retry_load_extensions()` to retry.
│ │ exception =
│ │ 1-element ExceptionStack:
│ │ Error when precompiling module, potentially caused by a __precompile__(false) declaration in the module.
│ │ Stacktrace:
│ │ [1] _require(pkg::Base.PkgId, env::Nothing)
│ │ @ Base ./loading.jl:2125
│ │ [2] __require_prelocked(uuidkey::Base.PkgId, env::Nothing)
│ │ @ Base ./loading.jl:1980
│ │ [3] #invoke_in_world#3
│ │ @ ./essentials.jl:1054 [inlined]
│ │ [4] invoke_in_world
│ │ @ ./essentials.jl:1051 [inlined]
│ │ [5] _require_prelocked
│ │ @ ./loading.jl:1971 [inlined]
│ │ [6] _require_prelocked
│ │ @ ./loading.jl:1970 [inlined]
│ │ [7] run_extension_callbacks(extid::Base.ExtensionId)
│ │ @ Base ./loading.jl:1374
│ │ [8] run_extension_callbacks(pkgid::Base.PkgId)
│ │ @ Base ./loading.jl:1409
│ │ [9] run_package_callbacks(modkey::Base.PkgId)
│ │ @ Base ./loading.jl:1234
│ │ [10] __require_prelocked(uuidkey::Base.PkgId, env::String)
│ │ @ Base ./loading.jl:1987
│ │ [11] #invoke_in_world#3
│ │ @ ./essentials.jl:1054 [inlined]
│ │ [12] invoke_in_world
│ │ @ ./essentials.jl:1051 [inlined]
│ │ [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
│ │ @ Base ./loading.jl:1971
│ │ [14] macro expansion
│ │ @ ./loading.jl:1909 [inlined]
│ │ [15] macro expansion
│ │ @ ./lock.jl:272 [inlined]
│ │ [16] __require(into::Module, mod::Symbol)
│ │ @ Base ./loading.jl:1870
│ │ [17] #invoke_in_world#3
│ │ @ ./essentials.jl:1054 [inlined]
│ │ [18] invoke_in_world
│ │ @ ./essentials.jl:1051 [inlined]
│ │ [19] require(into::Module, mod::Symbol)
│ │ @ Base ./loading.jl:1863
│ │ [20] include
│ │ @ ./Base.jl:526 [inlined]
│ │ [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
│ │ @ Base ./loading.jl:2427
│ │ [22] top-level scope
│ │ @ stdin:3
│ │ [23] eval
│ │ @ ./boot.jl:428 [inlined]
│ │ [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
│ │ @ Base ./loading.jl:2249
│ │ [25] include_string
│ │ @ ./loading.jl:2259 [inlined]
│ │ [26] exec_options(opts::Base.JLOptions)
│ │ @ Base ./client.jl:316
│ │ [27] _start()
│ │ @ Base ./client.jl:525
│ └ @ Base loading.jl:1380
└
┌ Symbolics → SymbolicsPreallocationToolsExt
│ ┌ Warning: Module SymbolicsPreallocationToolsExt with build ID ffffffff-ffff-ffff-0000-3ed3cec2613e is missing from the cache.
│ │ This may mean SymbolicsPreallocationToolsExt [d479e226-fb54-5ebe-a75e-a7af7f39127f] does not support precompilation but is imported by a module that does.
│ └ @ Base loading.jl:2121
│ ┌ Error: Error during loading of extension SymbolicsPreallocationToolsExt of Symbolics, use `Base.retry_load_extensions()` to retry.
│ │ exception =
│ │ 1-element ExceptionStack:
│ │ Error when precompiling module, potentially caused by a __precompile__(false) declaration in the module.
│ │ Stacktrace:
│ │ [1] _require(pkg::Base.PkgId, env::Nothing)
│ │ @ Base ./loading.jl:2125
│ │ [2] __require_prelocked(uuidkey::Base.PkgId, env::Nothing)
│ │ @ Base ./loading.jl:1980
│ │ [3] #invoke_in_world#3
│ │ @ ./essentials.jl:1054 [inlined]
│ │ [4] invoke_in_world
│ │ @ ./essentials.jl:1051 [inlined]
│ │ [5] _require_prelocked
│ │ @ ./loading.jl:1971 [inlined]
│ │ [6] _require_prelocked
│ │ @ ./loading.jl:1970 [inlined]
│ │ [7] run_extension_callbacks(extid::Base.ExtensionId)
│ │ @ Base ./loading.jl:1374
│ │ [8] run_extension_callbacks(pkgid::Base.PkgId)
│ │ @ Base ./loading.jl:1409
│ │ [9] run_package_callbacks(modkey::Base.PkgId)
│ │ @ Base ./loading.jl:1234
│ │ [10] __require_prelocked(uuidkey::Base.PkgId, env::String)
│ │ @ Base ./loading.jl:1987
│ │ [11] #invoke_in_world#3
│ │ @ ./essentials.jl:1054 [inlined]
│ │ [12] invoke_in_world
│ │ @ ./essentials.jl:1051 [inlined]
│ │ [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
│ │ @ Base ./loading.jl:1971
│ │ [14] macro expansion
│ │ @ ./loading.jl:1909 [inlined]
│ │ [15] macro expansion
│ │ @ ./lock.jl:272 [inlined]
│ │ [16] __require(into::Module, mod::Symbol)
│ │ @ Base ./loading.jl:1870
│ │ [17] #invoke_in_world#3
│ │ @ ./essentials.jl:1054 [inlined]
│ │ [18] invoke_in_world
│ │ @ ./essentials.jl:1051 [inlined]
│ │ [19] require(into::Module, mod::Symbol)
│ │ @ Base ./loading.jl:1863
│ │ [20] include
│ │ @ ./Base.jl:526 [inlined]
│ │ [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
│ │ @ Base ./loading.jl:2427
│ │ [22] top-level scope
│ │ @ stdin:3
│ │ [23] eval
│ │ @ ./boot.jl:428 [inlined]
│ │ [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
│ │ @ Base ./loading.jl:2249
│ │ [25] include_string
│ │ @ ./loading.jl:2259 [inlined]
│ │ [26] exec_options(opts::Base.JLOptions)
│ │ @ Base ./client.jl:316
│ │ [27] _start()
│ │ @ Base ./client.jl:525
│ └ @ Base loading.jl:1380
└ |
Closed
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This bug in extension precompilation was worked around on the Symbolics.jl side as of v5.17.0 and fixes are in progress in Julia. See JuliaLang/julia#53081 and JuliaLang/julia#53112 to track progress. Thanks! |
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With Julia 1.10 and Symbolics v5.16.1 I get precompilation errors. The errors are not present in Symbolics v5.16.0. This may be related to JuliaLang/julia#52132 and JuliaLang/julia#52511
To reproduce, remove the cache of compiled code:
and install Symbolics in a clean environment:
]activate --temp add Symbolicsthen I get the error message below:
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