[Reproducibility] 6 of the 8 targets are skipped in benchmark notebook

[exs-cbouy]

Refers to the JOSS submission review: openjournals/joss-reviews#5763

In the notebook, the first cell of the Benchmark FEPOPS using the DUDE diversity set section (third cell of the nb), the following change should be made:

diversity_set_csv_files = list(Path("data/dude/processed/diversity_set/")
-    .glob("dude_target_hiv*.csv")
+    .glob("dude_target*.csv")
)

Otherwise the notebook will only run for 2 out of 8 targets. Also the output of the same cell prints:

Got 1 diversity_set_csv_files : ['dude_target_ampc']

Although it should print out the 8 targets to be complete.

After making the above change and running the notebook I managed to reproduce the results shown in the table.

[stevenshave]

Thank you for being so thorough with the review, and apologies that elements from testing made it into the notebook. This has now been addressed in a13a7de and committed to the master branch with the fixed file glob pattern, and a refresh of all cell outputs.