@KHP-Informatics

KCL IoPPN: NIHR BRC-MH Bioinformatics Group

Welcome to the Bioinformatics Core at the National Biomedical Research Centre for Mental Health at KCL IoPPN

  • Manage a simulated hospital to understand patient flow bottlenecks

    JavaScript 1 2 Apache-2.0 Updated Aug 13, 2018
  • DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

    HTML 12 6 MIT Updated Jul 30, 2018
  • Feeding Gate GCP with CRIS data streaming from SQL database

    Java 1 Updated Jul 23, 2018
  • Scripts for use with data collected by RADAR

    Python 1 Updated May 24, 2018
  • Updated Apr 16, 2018
  • Updated Apr 16, 2018
  • Main repository of our data management and analysis system for ALS research

    JavaScript 2 1 Updated Apr 9, 2018
  • statistical model analysis for clozapine adverse reaction prediction

    Jupyter Notebook 1 Updated Dec 4, 2017
  • The National Biomedical Research Centre Biomedical Research Centre and Dementia Unit (BRC/U) at South London and Maudsley NHS Foundation Trust and King’s College London

    Updated Oct 18, 2017
  • This only exists to redirect to the actual repo: https://github.com/KHP-Informatics/patient-flow-simulator

    HTML Updated Oct 10, 2017
  • [Bio in Docker] Symposium 2015

    JavaScript 21 3 Updated Sep 26, 2017
  • Analysis pipeline of the SleepSight pilot study.

    Python 1 1 Apache-2.0 Updated Aug 28, 2017
  • An open-source application for biological image analysis

    Python 171 Updated Aug 22, 2017
  • Pharmacotherapy GATE application used by the BRC on CRIS text

    Java Updated Aug 7, 2017
  • Predicting adverse drug reactions from a knowledge graph

    Python 2 3 GPL-3.0 Updated Jul 24, 2017
  • Python 1 Apache-2.0 Updated Jul 12, 2017
  • Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

    Shell 71 31 GPL-2.0 1 issue needs help Updated Jul 10, 2017
  • JavaScript 1 1 Updated Jun 14, 2017
  • GATE applications used by the BRC on CRIS data

    2 Updated May 25, 2017
  • Java Updated May 9, 2017
  • Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning

    HTML 2 2 Apache-2.0 Updated May 9, 2017
  • processing illumina SNP arrays

    Shell 10 2 GPL-2.0 Updated Feb 3, 2017
  • identifying psychometric and neuroatonomy relations in publications

    JavaScript 2 1 Updated Jan 7, 2017
  • Episode Bitwise Encoding for temporal medical data

    Python 2 Updated Dec 7, 2016
  • 1 Updated Dec 3, 2016
  • ApacheConf 1 6 Updated Nov 21, 2016
  • A de-identification algorithm to remove personal identifiable information from free text clinical narratives.

    Java 5 Apache-2.0 Updated Nov 18, 2016
  • Artificial Neural Network Models for Adverse Drug Event Analytics

    Python 2 MIT Updated Nov 4, 2016
  • Updated Oct 31, 2016
  • ApacheConf Updated Oct 26, 2016