Skip to content

Issues: KIT-IBG-5/mdmcleaner

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

17 Open 31 Closed
17 Open 31 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

An error occured during blastp run with query '-'
#55 opened Jun 8, 2023 by rzhan186
3
Error when checking dependencies in mdmcleaner makedb
#54 opened Apr 12, 2023 by danpal96
3
Error in database downloading
#52 opened Mar 13, 2023 by uzun-masha
KeyError: 'Bacteria'
#38 opened Sep 7, 2022 by chassenr
@jvollme
4
highly contaminated bins should get a warning not to use filtered data even after cleaning documentation Improvements or additions to documentation enhancement New feature or request
#29 opened May 27, 2022 by jvollme Improvements A
@jvollme
1
t-rna based completeness estimations should not be returned for eukaryotic bins bug Something isn't working
#28 opened May 27, 2022 by jvollme
@jvollme
add a positive list for referencedb-ambiguities to speed things up enhancement New feature or request
#24 opened Mar 18, 2022 by jvollme improvementsB
@jvollme
dereplicate proteins on genus level to reduce database size
#21 opened Feb 21, 2022 by jvollme improvementsB
@jvollme
incorporate minHash
#20 opened Feb 21, 2022 by jvollme improvementsB
@jvollme
When workflows are aborted and then recontinued later, check that the database used is still the same... bug Something isn't working enhancement New feature or request
#19 opened Feb 7, 2022 by jvollme
@jvollme
implement lock-files bug Something isn't working enhancement New feature or request
#14 opened Dec 7, 2021 by jvollme
2 tasks
Improvements A
@jvollme
add functions to extract reference sequences from reference dbs enhancement New feature or request
#11 opened Dec 3, 2021 by jvollme
1 of 3 tasks
Improvements A
@jvollme
2
Correct, Complete and improve all docstrings. Add documentation to "readthedocs" documentation Improvements or additions to documentation
#6 opened Nov 30, 2021 by jvollme Improvements A
@jvollme
simplify report tables enhancement New feature or request
#5 opened Nov 30, 2021 by jvollme Improvements A
@jvollme
1
use prodigal results on eukaryotig contigs rather than refseq eukaryotic proteins enhancement New feature or request
#4 opened Nov 30, 2021 by jvollme
4 tasks
Improvements A
@jvollme
divide protein blast databases enhancement New feature or request
#3 opened Nov 30, 2021 by jvollme
3 tasks
Improvements A
@jvollme
todo: add metagenome workflows enhancement New feature or request
#2 opened Nov 30, 2021 by jvollme
2 tasks
Improvements A
@jvollme
ProTip! Updated in the last three days: updated:>2024-04-30.