[Bug] Auto-installed dependencies are marked as manually installed when installing from .ckan file

[HebaruSan]

Background

• Operating System: Ubuntu 19.whatever
• CKAN Version: 1.26.3
• KSP Version: 1.7.2

Have you made any manual changes to your GameData folder (i.e., not via CKAN)?
Yes, manual install of Astrogator which isn't involved in the test case.

Problem

When installing from the mod list, direct dependencies are correctly marked as auto-installed:

However, when installing from a .ckan file, direct dependencies are not marked as auto-installed (the extra installed modules are suggestions that were selected for installation and are not relevant to this problem, contrary to this issue's initial description):

Note how ModuleManager, Kopernicus, and ModularFlightIntegrator are auto-installed in the first screenshot but not in the second. They should be auto-installed in both.