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[BUG] Colab Notebook cannot retrieve RaSP files #6

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MariaT0 opened this issue Jan 10, 2024 · 0 comments
Open

[BUG] Colab Notebook cannot retrieve RaSP files #6

MariaT0 opened this issue Jan 10, 2024 · 0 comments

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@MariaT0
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MariaT0 commented Jan 10, 2024

Thanks for this great tool.

I succesfully ran the Colab notebook on 2024-01-08.

However, I've have been trying to re-run again since then but it the cell Retrieve RaSP files and parameters does not work. This is the error message:

---> Github data imported!
----> reduce installed

mv: cannot stat 'ds_models': No such file or directory
mv: cannot stat 'cavity_models': No such file or directory
mv: cannot move '/content/colab_additional/best_model_path.txt' to '/content/output/cavity_models/': Not a directory
mv: cannot move '/content/colab_additional/clean_pdb.py' to '/content/src/pdb_parser_scripts/': No such file or directory
mv: cannot move '/content/colab_additional/helpers.py' to '/content/src/': Not a directory
bash: line 41: cd: src/pdb_parser_scripts: No such file or directory
Cloning into 'reduce'...
mv: cannot move '/content/colab_additional/reduce' to '/content/src/pdb_parser_scripts/reduce/': No such file or directory
chmod: cannot access '/content/src/pdb_parser_scripts/reduce/reduce': No such file or directory

Is it perhaps related to Github sunsetting SVN support on Jan 8th 2024? https://github.blog/changelog/2024-01-08-subversion-has-been-sunset/

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