update 1.2.1

KVD-lab · Jul 28, 2020 · 00ec4c3 · 00ec4c3
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commit 00ec4c3
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diff --git a/docs/build/doctrees/docker_usage.doctree b/docs/build/doctrees/docker_usage.doctree
diff --git a/docs/build/doctrees/environment.pickle b/docs/build/doctrees/environment.pickle
diff --git a/docs/build/html/_sources/docker_usage.rst.txt b/docs/build/html/_sources/docker_usage.rst.txt
@@ -16,7 +16,7 @@ Now you should be able to run the image and see the following output:
 
 ::
 
-	$ docker run --rm -it kvdlab/puma:1.2.0
+	$ docker run --rm -it kvdlab/puma:1.2.1
 	usage: run_puma.py [-h] -i FILE [-f FORMAT] [-d DIR] [-o DIR] [-e FLOAT]
 	[-m NUM] [-D STR] [-L FILE]
 	run_puma.py: error: the following arguments are required: -i/--input
@@ -29,7 +29,7 @@ For instance, from within this "docker" directory, we can run the program like s
 	$ docker run --rm \
 	-v `pwd`/../data_dir:/data \           <1>
 	-v `pwd`/../input_and_output:/in_out \ <2>
-	kvdlab/puma:1.2.0 \                    <3>
+	kvdlab/puma:1.2.1 \                    <3>
 	run_puma.py -i /in_out/BPV2_new.fa -o /in_out/puma_out -d /data <4>
 
 1. The "data_dir" dir will be mounted as "/data"

diff --git a/docs/build/html/docker_usage.html b/docs/build/html/docker_usage.html
@@ -41,7 +41,7 @@ <h1>Usage via Docker<a class="headerlink" href="#usage-via-docker" title="Permal
 </pre></div>
 </div>
 <p>Now you should be able to run the image and see the following output:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span>$ docker run --rm -it kvdlab/puma:1.2.0
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span>$ docker run --rm -it kvdlab/puma:1.2.1
 usage: run_puma.py [-h] -i FILE [-f FORMAT] [-d DIR] [-o DIR] [-e FLOAT]
 [-m NUM] [-D STR] [-L FILE]
 run_puma.py: error: the following arguments are required: -i/--input
@@ -52,7 +52,7 @@ <h1>Usage via Docker<a class="headerlink" href="#usage-via-docker" title="Permal
 <div class="highlight-default notranslate"><div class="highlight"><pre><span></span>$ docker run --rm \
 -v `pwd`/../data_dir:/data \           &lt;1&gt;
 -v `pwd`/../input_and_output:/in_out \ &lt;2&gt;
-kvdlab/puma:1.2.0 \                    &lt;3&gt;
+kvdlab/puma:1.2.1 \                    &lt;3&gt;
 run_puma.py -i /in_out/BPV2_new.fa -o /in_out/puma_out -d /data &lt;4&gt;
 </pre></div>
 </div>

diff --git a/docs/source/docker_usage.rst b/docs/source/docker_usage.rst
@@ -16,7 +16,7 @@ Now you should be able to run the image and see the following output:
 
 ::
 
-	$ docker run --rm -it kvdlab/puma:1.2.0
+	$ docker run --rm -it kvdlab/puma:1.2.1
 	usage: run_puma.py [-h] -i FILE [-f FORMAT] [-d DIR] [-o DIR] [-e FLOAT]
 	[-m NUM] [-D STR] [-L FILE]
 	run_puma.py: error: the following arguments are required: -i/--input
@@ -29,7 +29,7 @@ For instance, from within this "docker" directory, we can run the program like s
 	$ docker run --rm \
 	-v `pwd`/../data_dir:/data \           <1>
 	-v `pwd`/../input_and_output:/in_out \ <2>
-	kvdlab/puma:1.2.0 \                    <3>
+	kvdlab/puma:1.2.1 \                    <3>
 	run_puma.py -i /in_out/BPV2_new.fa -o /in_out/puma_out -d /data <4>
 
 1. The "data_dir" dir will be mounted as "/data"