add DB version v0.4 (2018-09-14)

README.md

@@ -1,3 +1,19 @@
+# v0.4
+
+Based on v0.3
+
+Added new parameter "...Description" in the following tables:
+- tbl_waterSource
+- tbl_pathogen
+- tbl_pathogenGroup
+- tbl_exposure 
+- tbl_guideline
+- tbl_treatment
+
+
+Updated DB structure overview with new parameter
+
+
 # v0.3
 
 Status after internal QA with DB expert Hauke:

qmra-db_accdb/tbl_exposure.csv

@@ -1,7 +1,7 @@
-"WaterUseID","WaterUseName","events_perYear","litres_perEvent","ReferenceID"
-1,"irrigation, unrestricted",NA,NA,NA
-2,"domestic use, car washing",NA,NA,NA
-7,"irrigation, public",50,0.001,NA
-3,"irrigation, restricted",NA,NA,NA
-4,"domestic use, toilet flushing",1000,1e-05,NA
-5,"drinking water",365,1,NA
+"WaterUseID","WaterUseName","WaterUseDescription","events_perYear","litres_perEvent","ReferenceID"
+1,"irrigation, unrestricted",NA,NA,NA,NA
+2,"domestic use, car washing",NA,NA,NA,NA
+7,"irrigation, public",NA,50,0.001,NA
+3,"irrigation, restricted",NA,NA,NA,NA
+4,"domestic use, toilet flushing",NA,1000,1e-05,NA
+5,"drinking water",NA,365,1,NA

qmra-db_accdb/tbl_guideline.csv

@@ -1,3 +1,3 @@
-"GuidelineID","GuidelineName","ReferenceID"
-1,"WHO 10-6 DALY",40
-2,"NL 1/10000 infection risk",NA
+"GuidelineID","GuidelineName","GuidelineDescription","ReferenceID"
+1,"WHO 10-6 DALY",NA,40
+2,"NL 1/10000 infection risk",NA,NA

qmra-db_accdb/tbl_pathogen.csv

@@ -1,38 +1,38 @@
-"PathogenID","PathogenName","PathogenGroupID"
-1,"Bacillus anthracis",1
-2,"Burkholderia pseudomallei",1
-3,"Campylobacter jejuni",1
-4,"Coxiella burnetii",1
-5,"Escherichia coli enterohemorrhagic (EHEC)",1
-6,"Escherichia coli",1
-7,"Francisella tularensis",1
-8,"Legionella pneumophila",1
-9,"Listeria monocytogenes (Death as response)",1
-10,"Listeria monocytogenes (Infection)",1
-11,"Listeria monocytogenes (Stillbirths)",1
-12,"Mycobacterium avium",1
-13,"Pseudomonas aeruginosa (Contact lens)",1
-14,"Pseudomonas aeruginosa (bacterimia)",1
-15,"Rickettsia rickettsi",1
-16,"Salmonella Typhi",1
-17,"Salmonella anatum",1
-18,"Salmonella meleagridis",1
-19,"Salmonella nontyphoid",1
-20,"Salmonella serotype newport",1
-21,"Shigella",1
-22,"Staphylococcus aureus",1
-23,"Vibrio cholerae",1
-24,"Yersinia pestis",1
-25,"Adenovirus",2
-26,"Echovirus",2
-27,"Enteroviruses",2
-28,"Influenza",2
-29,"Lassa virus",2
-30,"Poliovirus",2
-31,"Rhinovirus",2
-32,"Rotavirus",2
-33,"SARS",2
-34,"Cryptosporidium parvum",3
-35,"Endamoeba coli",3
-36,"Giardia duodenalis",3
-37,"Naegleria fowleri",3
+"PathogenID","PathogenName","PathogenDescription","PathogenGroupID"
+1,"Bacillus anthracis",NA,1
+2,"Burkholderia pseudomallei",NA,1
+3,"Campylobacter jejuni",NA,1
+4,"Coxiella burnetii",NA,1
+5,"Escherichia coli enterohemorrhagic (EHEC)",NA,1
+6,"Escherichia coli",NA,1
+7,"Francisella tularensis",NA,1
+8,"Legionella pneumophila",NA,1
+9,"Listeria monocytogenes (Death as response)",NA,1
+10,"Listeria monocytogenes (Infection)",NA,1
+11,"Listeria monocytogenes (Stillbirths)",NA,1
+12,"Mycobacterium avium",NA,1
+13,"Pseudomonas aeruginosa (Contact lens)",NA,1
+14,"Pseudomonas aeruginosa (bacterimia)",NA,1
+15,"Rickettsia rickettsi",NA,1
+16,"Salmonella Typhi",NA,1
+17,"Salmonella anatum",NA,1
+18,"Salmonella meleagridis",NA,1
+19,"Salmonella nontyphoid",NA,1
+20,"Salmonella serotype newport",NA,1
+21,"Shigella",NA,1
+22,"Staphylococcus aureus",NA,1
+23,"Vibrio cholerae",NA,1
+24,"Yersinia pestis",NA,1
+25,"Adenovirus",NA,2
+26,"Echovirus",NA,2
+27,"Enteroviruses",NA,2
+28,"Influenza",NA,2
+29,"Lassa virus",NA,2
+30,"Poliovirus",NA,2
+31,"Rhinovirus",NA,2
+32,"Rotavirus",NA,2
+33,"SARS",NA,2
+34,"Cryptosporidium parvum",NA,3
+35,"Endamoeba coli",NA,3
+36,"Giardia duodenalis",NA,3
+37,"Naegleria fowleri",NA,3

qmra-db_accdb/tbl_pathogenGroup.csv

@@ -1,4 +1,4 @@
-"PathogenGroupID","PathogenGroup"
-1,"Bacteria"
-2,"Viruses"
-3,"Protozoa"
+"PathogenGroupID","PathogenGroup","PathogenGroupDescription"
+1,"Bacteria",NA
+2,"Viruses",NA
+3,"Protozoa",NA

qmra-db_accdb/tbl_treatment.csv

@@ -1,34 +1,34 @@
-"TreatmentID","TreatmentName","TreatmentGroup"
-27,"Ultrafiltration","Filtration"
-28,"Nanofiltration","Filtration"
-1,"Conventional clarification","Coagulation, flocculation and sedimentation"
-2,"Dissolved air flotation","Coagulation, flocculation and sedimentation"
-3,"High-rate clarification","Coagulation, flocculation and sedimentation"
-4,"Lime softening","Coagulation, flocculation and sedimentation"
-5,"Granular high-rate filtration","Filtration"
-6,"Membrane filtration (micro, ultra-, nanofiltration, reverse osmosis)","Filtration"
-7,"Precoat filtration","Filtration"
-8,"Slow sand filtration","Filtration"
-9,"Bank filtration","Pretreatment"
-10,"Roughing filters","Pretreatment"
-11,"Storage reservoirs","Pretreatment"
-12,"Chlorine","Primary disinfection"
-13,"Chlorine dioxide","Primary disinfection"
-14,"Ozone","Primary disinfection"
-15,"UV","Primary disinfection"
-16,"Primary treatment","Pretreatment"
-17,"Secondary treatment","Pretreatment"
-18,"Dual media filtration","Filtration"
-19,"Membrane filtration","Filtration"
-20,"Chlorination","Primary disinfection"
+"TreatmentID","TreatmentName","TreatmentGroup","TreatmentDescription"
+27,"Ultrafiltration","Filtration",NA
+28,"Nanofiltration","Filtration",NA
+1,"Conventional clarification","Coagulation, flocculation and sedimentation",NA
+2,"Dissolved air flotation","Coagulation, flocculation and sedimentation",NA
+3,"High-rate clarification","Coagulation, flocculation and sedimentation",NA
+4,"Lime softening","Coagulation, flocculation and sedimentation",NA
+5,"Granular high-rate filtration","Filtration",NA
+6,"Membrane filtration (micro, ultra-, nanofiltration, reverse osmosis)","Filtration",NA
+7,"Precoat filtration","Filtration",NA
+8,"Slow sand filtration","Filtration",NA
+9,"Bank filtration","Pretreatment",NA
+10,"Roughing filters","Pretreatment",NA
+11,"Storage reservoirs","Pretreatment",NA
+12,"Chlorine","Primary disinfection",NA
+13,"Chlorine dioxide","Primary disinfection",NA
+14,"Ozone","Primary disinfection",NA
+15,"UV","Primary disinfection",NA
+16,"Primary treatment","Pretreatment",NA
+17,"Secondary treatment","Pretreatment",NA
+18,"Dual media filtration","Filtration",NA
+19,"Membrane filtration","Filtration",NA
+20,"Chlorination","Primary disinfection",NA
 21,"Reverse osmosis
 os-
-mosis","Filtration"
-22,"Ozonation","Primary disinfection"
+mosis","Filtration",NA
+22,"Ozonation","Primary disinfection",NA
 23,"Wetlands, surface flow
 (surface 
-Wetlands, surface flow",NA
-24,"Wetlands, subsurface flow",NA
+Wetlands, surface flow",NA,NA
+24,"Wetlands, subsurface flow",NA,NA
 25,"UV radiation
-UV","Primary disinfection"
-26,"Microfiltration","Filtration"
+UV","Primary disinfection",NA
+26,"Microfiltration","Filtration",NA

qmra-db_accdb/tbl_waterSource.csv

@@ -1,9 +1,9 @@
-"WaterSourceID","WaterSourceName"
-1,"sewage, treated"
-2,"surface water"
-3,"surface water, contaminated"
-4,"surface water, protected"
-5,"harvesting, rainwater"
-6,"harvesting, stormwater"
-7,"drinking water"
-8,"sewage, raw"
+"WaterSourceID","WaterSourceName","WaterSourceDescription"
+1,"sewage, treated",NA
+2,"surface water",NA
+3,"surface water, contaminated",NA
+4,"surface water, protected",NA
+5,"harvesting, rainwater",NA
+6,"harvesting, stormwater",NA
+7,"drinking water",NA
+8,"sewage, raw",NA