indexSort

Overview

This package contains functions to retrieve index sorted data and visually explore .fcs data files from various cell sorters.

Installation

You can install the development version from GitHub with devtools:

install.packages("devtools")
devtools::install_github("Kawameicha/indexSort")

Features

• Retrieve index sorted data with retrieve_index() currently supported for:
  • BD FACSAriaIII^TM
  • BD FACSAria Fusion^TM
  • BD FACSymphony S6^TM
  • BD Influx^TM
  • BD FACSJazz^TM
  • MoFlo Astrios^TM
• Display median fluorescence and number of cells per well with explore_plate().

Usage

library(tidyverse)
library(flowCore)
library(indexSort)

inputFCS <- read.FCS("~/path/to/file.fcs")
result <- retrieve_index(inputFCS)
explore_plate(result, vars = c("APC.A", "FITC.A", "Pacific.Blue.A", "Time"))

Community Guidelines

This project is released with a Code of Conduct. By participating in this project you agree to abide by its terms. Feedback, bug reports (and fixes!), and feature requests are welcome; file issues or seek support here.

License

Apache 2.0 © Christoph Freier