Those scripts were used for paper "Proteomic analysis reveals similarity of expression profile in aggregated lymphoid nodules area in abomasum with Peyer’s patches of Bactrian camel (Camelus bactrianus)".
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Quality_control.Rmd This script has been used to plot the quality of data.
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Immune_protein_camel.Rmd Using human database we can mark the immune-related gene in camel according to the genes from the same orthologs.
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Quantitation.Rmd This script reads and filtered the quantification data. Then, the cleaned data has been analyzed by comparing different groups.
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Pathway_analysis.Rmd This is the script for pathway enrichment analysis.