FastqGizmo

• Get Basic Fastq file Stats
  • Base Count
  • NBase Read Count - Count by Read Nbase count
• HTML Report
  • Tables with Graphs

Version History

• 9 Nov 2018 - FastqGizmo v1.0

How to use

• You can run FastqGizmo at console environment.
• java 1.8 is required.
• $ java -jar FastqGizmo.jar <read_1.fastq.gz> <read_2.fastq.gz>

Tool Description

• BasicStat Shows basic stat (Base count, Base quality).

• NBaseReadStat Shows N-base read stat (count number of read containing N-base).

• StatReport Make HTML Stat Report in result.html file.