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This is a collection of scripts for transcriptome sequencing and Whole Genome Bisulfite Sequencing (WGBS) analysis

* for specific requirement or usage, please look into the script file.

Name		Name	Last commit message	Last commit date
Latest commit History 216 Commits
.idea		.idea
.vscode		.vscode
data		data
enrichment_analysis		enrichment_analysis
methylation		methylation
miRNA		miRNA
others_useful_script		others_useful_script
pynut		pynut
.Rapp.history		.Rapp.history
Single_Copy_Homoeologs.xlsx		Single_Copy_Homoeologs.xlsx
Small RNA seq analysis log.txt		Small RNA seq analysis log.txt
SumOrthorfinder.py		SumOrthorfinder.py
class_transform.py		class_transform.py
converSRAID.py		converSRAID.py
counting_transcripts.py		counting_transcripts.py
excute_target_finder.py		excute_target_finder.py
extract_assembled_id_from_stringtie.py		extract_assembled_id_from_stringtie.py
extract_fasta_fromID.py		extract_fasta_fromID.py
fasta_handle.py		fasta_handle.py
fasta_length_calc.py		fasta_length_calc.py
fastq_length_filter.py		fastq_length_filter.py
filterHubFromWGCNA.ipynb		filterHubFromWGCNA.ipynb
filter_alignments.py		filter_alignments.py
getHomoeolog.py		getHomoeolog.py
getTransGeneMap.py		getTransGeneMap.py
get_MATS_result.py		get_MATS_result.py
get_align_stat_hisat2.py		get_align_stat_hisat2.py
get_align_stat_star.py		get_align_stat_star.py
get_fastqc.py		get_fastqc.py
get_trim_report.py		get_trim_report.py
long_rna_analysis_log.txt		long_rna_analysis_log.txt
matchExcelbyCol.py		matchExcelbyCol.py
readme.md		readme.md
reciprocol_blast_selection.py		reciprocol_blast_selection.py
retirieve_high_GC_reads.py		retirieve_high_GC_reads.py
test.py		test.py
volcano_plot.r		volcano_plot.r
wgbs_analysis_log.txt		wgbs_analysis_log.txt

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