PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as it provides an interface to BioC.
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BioC_export
PMC
PyLucene
data
documentation
full_text_index
full_text_index_title_text
plots
.gitignore
PubMedDB.py
PubMedParser.py
README.md
create_schema.sql
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README.md

PubMedPortable

PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as it provides an interface to BioC.

Please, have a look at our Wiki for more information.

To cite PubMedPortable, please reference:

Döring K, Grüning BA, Telukunta KK, Thomas P, Günther S (2016) PubMedPortable: A Framework for Supporting the Development of Text Mining Applications. PLoS ONE 11(10): e0163794. doi:10.1371/journal.pone.0163794