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Worm tracking matlab code using multiple hypotheses
MATLAB C Cuda
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Cal_Esti 2 layers forecasting, 4.2 version Apr 10, 2015
Cal_Likelihood Worm BBQ 2.1 Jun 24, 2015
Create_Test_Video Worm BBQ 2.1 Jun 24, 2015
Data_source Worm BBQ 2.1 Jun 24, 2015
Forecasting Worm BBQ 2.1 Jun 24, 2015
GUI Worm BBQ 2.1 Jun 24, 2015
Generate_Frenet_1 Worm BBQ 2.1 Jun 24, 2015
Init Worm BBQ 2.1 Jun 24, 2015
Other Worm BBQ 2.1 Jun 24, 2015
Resampleing worm_BBQ,1.27 May 15, 2015
Sample_Video/hdf5 worm BBQ 2.2 Jul 7, 2015
Show_Wrom
Texture Worm BBQ 2.1 Jun 24, 2015
pics worm_BBQ, 1.24 version Apr 24, 2015
poly2mask_gpu 2 layers forecasting, 4.1 version Apr 9, 2015
profile 2 layers forecasting, 3rd version Mar 31, 2015
pub_func 2 layers forecasting, 4th version Apr 8, 2015
results Worm BBQ 2.1 Jun 24, 2015
Create_Test.m worm_BBQ,1.27 May 15, 2015
Flow_Chart.docx Tracking Hypo Feb 26, 2015
Flow_Chart.pdf Tracking Hypo 1.0 Mar 6, 2015
Generate_Frenet_1.m Worm BBQ 2.1 Jun 24, 2015
Gui_mainbody.m Worm BBQ 2.1 Jun 24, 2015
Gui_test1.asv Worm BBQ 2.1 Jun 24, 2015
Gui_test1.fig Worm BBQ 2.1 Jun 24, 2015
Gui_test1.m Worm BBQ 2.1 Jun 24, 2015
Main_TwoLayers.m Worm BBQ 2.1 Jun 24, 2015
ParameterTable.xlsx worm_BBQ, 2.0 Jun 16, 2015
User_Manual(1.0).docx worm_BBQ, 1.31 Jun 2, 2015
User_Manual(1.0).pdf worm_BBQ, 1.22 version Apr 22, 2015
draw_hypo_test.m worm_BBQ,1.27 May 15, 2015
frenet_6544.mat Worm BBQ 2.1 Jun 24, 2015
read_hdf5.m worm_BBQ, 2.0 Jun 16, 2015
read_hdf5_func.m Worm BBQ 2.1 Jun 24, 2015
read_hdf5_func_GUI.m Worm BBQ 2.1 Jun 24, 2015
readme.txt worm_BBQ, 1.22 version Apr 22, 2015
texture_temp1.mat worm_BBQ, 1.29 May 22, 2015

readme.txt

Readme

Run ‘Main_TwoLayers.m’ as the main function to track the single worm (approximately
2~3 seconds per frame, total time depends on the frame number of the video). The result is
a tracking video with ‘.tif’ format saved in the ‘results’ folder.

Details please refer to 'User_Manual(1.0)'.

See the Flow_Chart to have an idea of the functions. 


@copyright Kezhi Li, MRC, Imperial, Feb 2015.
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