NemoLib-V2--Testing

=========== This repository includes sample programs designed to run with the nemolib (https://github.com/Kimw6/NemoLib-Java-V2) library, specifically to execute the NemoProfile algorithm both sequentially and in parallel.

Testing in Linux

• Install the nemolib library, located at: https://github.com/Kimw6/NemoLib-Java-V2
• Compile this testing files with the following commands

1. git clone https://github.com/Kimw6/NemoLib-Java-V2-Testing.git

2. Install

   • cd NemoLib-Java-V2-Testing/nemoprofile-master/sequentialApp/src/main/resources/
   • chmod 777 labelg
   • cd NemoLib-Java-V2-Testing/nemoprofile-master/sequentialApp/
   • chmod 777 compile.sh
   • Edit compile.sh for the path for nemolib-0.1-SNAPSHOT.jar (in the folder, NemoLib-Java-V2/nemolib-master/target/)
   • chmod 777 run.sh
   • Edit run.sh for the correct path for nemolib-0.1-SNAPSHOT.jar

3. Compile and run ./compile.sh ./run.sh ../data/test01 3 100

• Each program may have additional requirements found in its README file.

Testing in Windows

• Install of the nemolib library, located at: https://github.com/Kimw6/NemoLib-Java-V2/
• download the testing files as zip from this site
• In Netbeans, creat new project as java with existing code. Main folder is sequentialApp
• Add library jar (nemolib-0.1-SNAPSHOT.jar)
• Compile nauty program (the instruction follows) to obtain "labelg.exe"
• Put the "labelg.exe" by following the link that is defined in the "Labeler.jar" from NemoLib
• Right Click the project. Choose "property". Add argument "../data/test01 3 100 1"
• Then run the project

Compile Nauty

• NemoLib java is dependent on nauty program for graph label. Therefore, you should have a working "labelg.exe" program in your computer.
• From http://pallini.di.uniroma1.it/ Download nauty26r10.tar.gz
• If you are using cygwin
  • Open cygwin-terminal
  • Go to the downloaded folder (for example cd /cygdrive/c/users/Name/programs) -Then use as if it is a linux-shell
• Or if you are using netbeans IDE (using cygwin), just create a project with existing source, will build automatically
• Locate "labelg.exe" program

Contact

If you have any questions, contact Drew Andersen at drewda81@gmail.com.