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Removed multiqc rule
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mgalland committed May 17, 2019
1 parent 72f708e commit 68dbdbc
Showing 1 changed file with 0 additions and 14 deletions.
14 changes: 0 additions & 14 deletions Snakefile
Expand Up @@ -113,17 +113,3 @@ include : "rules/external_data.smk"
include : 'rules/pre_processing.smk'
include : "rules/macs2_peak_calling.smk"
include : "rules/deeptools_post_processing.smk"


rule multiqc:
input:
expand(RESULT_DIR + "fastqc/{sample}_{pair}_fastqc.zip", sample=SAMPLES, pair={"forward", "reverse"}),
expand(RESULT_DIR + "bed/{sample}_peaks.xls", sample= SAMPLES)
output:
"qc/multiqc.html"
params:
"" # Optional: extra parameters for multiqc.
log:
"logs/multiqc.log"
wrapper:
"0.27.1/bio/multiqc"

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