Don't clear fragments in --dry-run mode.

Ugh, I just accidentally deleted 3 days of jobs because of this...
Kortemme-Lab · Jan 20, 2018 · 376994f · 376994f
1 parent 87a94b6
commit 376994f
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/pull_into_place/commands/02_setup_model_fragments.py b/pull_into_place/commands/02_setup_model_fragments.py
@@ -39,8 +39,6 @@ def main():
 
     workspace = pipeline.RestrainedModels(args['<workspace>'])
     workspace.check_paths()
-    workspace.make_dirs()
-    workspace.clear_fragments()
 
     # Run the fragment generation script.
 
@@ -58,4 +56,6 @@ def main():
     if args['--dry-run']:
         print ' '.join(generate_fragments)
     else:
+        workspace.make_dirs()
+        workspace.clear_fragments()
         subprocess.call(generate_fragments)
diff --git a/pull_into_place/commands/07_setup_design_fragments.py b/pull_into_place/commands/07_setup_design_fragments.py
@@ -33,8 +33,6 @@ def main():
     workspace = pipeline.ValidatedDesigns(args['<workspace>'], args['<round>'])
     workspace.check_paths()
     workspace.check_rosetta()
-    workspace.make_dirs()
-    workspace.clear_fragments()
 
     # Run the fragment generation script.
 
@@ -49,5 +47,7 @@ def main():
     if args['--dry-run']:
         print ' '.join(generate_fragments)
     else:
+        workspace.make_dirs()
+        workspace.clear_fragments()
         subprocess.call(generate_fragments)