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Fix 292 and singularity image #327
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…s generated from alphafold pipeline
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# Add extra features to make it compatible with pickle features obtaiend from mmseqs2 | ||
template_confidence_scores = self.feature_dict.get('template_confidence_scores', None) | ||
template_release_date = self.feature_dict.get('template_release_date', None) |
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Have you tried to run the entire prediction cycle with mixed features? I am not sure AF accepts 'None' as the template_confidence_score and template_release_date
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Have you tried to run the entire prediction cycle with mixed features? I am not sure AF accepts 'None' as the template_confidence_score and template_release_date
@DimaMolod This step is only preparing for the next block, which will create some fake values if these features are None.
AlphaPulldown/alphapulldown/objects.py
Lines 158 to 163 in fe456e6
if template_confidence_scores is None: | |
self.feature_dict.update( | |
{'template_confidence_scores': np.array([[1] * len(self.sequence)])} | |
) | |
if template_release_date is None: | |
self.feature_dict.update({"template_release_date" : ['none']}) |
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