SCclust R package

The SCclust package implements feature selection based on breakpoints, permutations for FDRs for Fisher test p-values and identification of the clone structure in single cell copy number profiles.

Threre are two alternative ways to install SCclust package:

installation from source;
intallation as a conda package.

Installation from source

Download SCclust source package from Github: https://github.com/KrasnitzLab/SCclust/archive/refs/tags/1.0.7.tar.gz into your working directory;
Run R and install the package from downloaded source:
```
install.packages("SCclust-1.0.7.tar.gz")
```

Conda installer

The SCclust package can also be installed using KrasnitzLab Anaconda channel. First create a new conda environment:
```
conda create -n scclust
conda activate scclust
```
and after that install SCclust inside it:
```
conda install -c bioconda -c conda-forge -c krasnitzlab scclust
```