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  • CIDR
  • Baltimore, MD

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Achievement: QuickdrawAchievement: Arctic Code Vault Contributor
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  1. CIDR_WES CIDR_WES Public

    CIDR's production pipeline for WES and other targeted DNA sequencing projects.

    Shell

  2. CIDR_SEQ_CAPTURE_JOINT_CALL CIDR_SEQ_CAPTURE_JOINT_CALL Public

    CIDR exome and targeted resequencing joint calling/filtering pipeline

    Shell

  3. CIDR_SOMATIC_WES_PIPELINES CIDR_SOMATIC_WES_PIPELINES Public

    currently for paired tumor - normal WES samples processed with TWIST UMIs

    Shell 1

  4. CIDR_EXOME_MITO CIDR_EXOME_MITO Public

    stop gap exome pipeline ported over from clinical stand-alone pipeline

    Perl

  5. CIDR_DATA_ARCHIVING CIDR_DATA_ARCHIVING Public

    Shell

  6. DEMUX_BCL2FQ DEMUX_BCL2FQ Public

    Brian Craig's scripts for lab managers to use for submitting ilmn bcl2fastq jobs to sge

    Shell