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I think it may be helpful to throw an example into Jupyter notebook and link to it (or https://docs.readthedocs.io/en/stable/guides/jupyter.html)
Especially since the tutorial jumps around between running things on command line and python
Benchmarking Example
Exploring a metagenome/binning using Autometa imports
Additional code snippets could be added using the autometa api located on autometa.readthedocs.io under Autometa python API
Quickly determining a set of contigs' bin metrics
Quickly retrieving a set of taxids lineages (including both canonical and non-canonical ranks)
Some parameter sweep workflows regarding kmers or binning (maybe tying in benchmarking from above?)
The text was updated successfully, but these errors were encountered:
evanroyrees
changed the title
I think it may be helpful to throw an example into Jupyter notebook and link to it (or https://docs.readthedocs.io/en/stable/guides/jupyter.html)
I think it may be helpful to throw an example into Jupyter notebook and link to it
Jan 7, 2022
evanroyrees
changed the title
I think it may be helpful to throw an example into Jupyter notebook and link to it
Add Jupyter notebook examples
Jan 7, 2022
I think it may be helpful to throw an example into Jupyter notebook and link to it (or https://docs.readthedocs.io/en/stable/guides/jupyter.html)
Especially since the tutorial jumps around between running things on command line and python
Additional code snippets could be added using the autometa api located on autometa.readthedocs.io under Autometa python API
Originally posted by @chasemc in #189 (comment)
The text was updated successfully, but these errors were encountered: