Add check for nr.dmnd and nr.gz #221
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if `params.large_downloads_permission = false` and nr.gz existed but nr.dmnd the pipeline would fail.
This...
// check for nr.dmnd, if not found, check for nr.gz
// if nr.gz exists, create nr.dmnd
// if nr.gz also doesn't exist, stop the pipeline
evanroyrees
reviewed
Jan 19, 2022
| // check for nr.dmnd, if not found, check for nr.gz | ||
| // if nr.gz exists, create nr.dmnd | ||
| // if nr.gz also doesn't exist, stop the pipeline | ||
| if (!file("${params.nr_dmnd_dir}/nr.dmnd").exists()) { |
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Does the diamond_db channel also need to be set within an else statement for when nr.dmnd exists?
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if
params.large_downloads_permission = falseand nr.gz existed but nr.dmnd didnlt the pipeline would fail.This...
// check for nr.dmnd, if not found, check for nr.gz
// if nr.gz exists, create nr.dmnd
// if nr.gz also doesn't exist, stop the pipeline