* Pin sphinx to version 6
* readthedocs build now requires installing autometa using `pip` in .readthedocs.yml
* Add mocks for gdown, attrs, numpy, pandas, scipy, numba, skbio, trimap
* Pin docutils between 0.18 and 0.20
* Pin sphinx_rtd_theme to 1.2

- `autometa-binning` parameter explanation is now in the same order as the commands are input
- deprecated `--domain` has been replaced with `--rank-filter-name`

🐛 Fix bug with running GTDB taxonomic workflow

commit @Sidduppal  additions and @WiscEvan  suggestions minus changes moved to separate PR

Co-authored-by: Evan Rees <25933122+WiscEvan@users.noreply.github.com>

…into sidd/gtdb-hotfix

* implements changes by @sidd in issue #329 in a separate new PR

* add pre commit hook to remove unused imports

* 🎨💚 removed sed/cut changes that belong to another PR

- 💚🐳🔥⬆️   Remove pins for scipy, scikit-learn and joblib
- 💚 🐳 Add build schedule for Autometa docker images
    > This will help to more quickly identify when builds begin failing
    > Add `nightly` tag for scheduled build
- 🐳 change user workdir to `/Autometa`