-
Notifications
You must be signed in to change notification settings - Fork 1
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Showing
80 changed files
with
27,849 additions
and
473 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
|
@@ -2,7 +2,6 @@ | |
*.pickle | ||
*.pdb | ||
*.pse | ||
docs/ | ||
|
||
# VScode | ||
.vscode | ||
|
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,123 @@ | ||
# This file was automatically generated by SWIG (http://www.swig.org). | ||
# Version 4.0.2 | ||
# | ||
# Do not make changes to this file unless you know what you are doing--modify | ||
# the SWIG interface file instead. | ||
|
||
from sys import version_info as _swig_python_version_info | ||
if _swig_python_version_info < (2, 7, 0): | ||
raise RuntimeError("Python 2.7 or later required") | ||
|
||
# Import the low-level C/C++ module | ||
if __package__ or "." in __name__: | ||
from . import _SERD | ||
else: | ||
import _SERD | ||
|
||
try: | ||
import builtins as __builtin__ | ||
except ImportError: | ||
import __builtin__ | ||
|
||
def _swig_repr(self): | ||
try: | ||
strthis = "proxy of " + self.this.__repr__() | ||
except __builtin__.Exception: | ||
strthis = "" | ||
return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,) | ||
|
||
|
||
def _swig_setattr_nondynamic_instance_variable(set): | ||
def set_instance_attr(self, name, value): | ||
if name == "thisown": | ||
self.this.own(value) | ||
elif name == "this": | ||
set(self, name, value) | ||
elif hasattr(self, name) and isinstance(getattr(type(self), name), property): | ||
set(self, name, value) | ||
else: | ||
raise AttributeError("You cannot add instance attributes to %s" % self) | ||
return set_instance_attr | ||
|
||
|
||
def _swig_setattr_nondynamic_class_variable(set): | ||
def set_class_attr(cls, name, value): | ||
if hasattr(cls, name) and not isinstance(getattr(cls, name), property): | ||
set(cls, name, value) | ||
else: | ||
raise AttributeError("You cannot add class attributes to %s" % cls) | ||
return set_class_attr | ||
|
||
|
||
def _swig_add_metaclass(metaclass): | ||
"""Class decorator for adding a metaclass to a SWIG wrapped class - a slimmed down version of six.add_metaclass""" | ||
def wrapper(cls): | ||
return metaclass(cls.__name__, cls.__bases__, cls.__dict__.copy()) | ||
return wrapper | ||
|
||
|
||
class _SwigNonDynamicMeta(type): | ||
"""Meta class to enforce nondynamic attributes (no new attributes) for a class""" | ||
__setattr__ = _swig_setattr_nondynamic_class_variable(type.__setattr__) | ||
|
||
|
||
|
||
def igrid(grid): | ||
return _SERD.igrid(grid) | ||
|
||
def fill(grid, atoms, reference, sincos, step, probe, nthreads): | ||
return _SERD.fill(grid, atoms, reference, sincos, step, probe, nthreads) | ||
|
||
def check_protein_neighbours(grid, i, j, k): | ||
return _SERD.check_protein_neighbours(grid, i, j, k) | ||
|
||
def ses(grid, step, probe, nthreads): | ||
return _SERD.ses(grid, step, probe, nthreads) | ||
|
||
def define_surface_points(grid, i, j, k): | ||
return _SERD.define_surface_points(grid, i, j, k) | ||
|
||
def filter_surface(grid, nthreads): | ||
return _SERD.filter_surface(grid, nthreads) | ||
|
||
def remove_noise_points(grid, i, j, k): | ||
return _SERD.remove_noise_points(grid, i, j, k) | ||
|
||
def filter_noise_points(grid, nthreads): | ||
return _SERD.filter_noise_points(grid, nthreads) | ||
|
||
def check_unclustered_neighbours(grid, i, j, k): | ||
return _SERD.check_unclustered_neighbours(grid, i, j, k) | ||
|
||
def flood_and_fill(grid, i, j, k, tag): | ||
return _SERD.flood_and_fill(grid, i, j, k, tag) | ||
|
||
def filter_enclosed_regions(grid, step, nthreads): | ||
return _SERD.filter_enclosed_regions(grid, step, nthreads) | ||
|
||
def _surface(grid, nx, ny, nz, atoms, reference, sincos, step, probe, is_ses, nthreads, verbose): | ||
return _SERD._surface(grid, nx, ny, nz, atoms, reference, sincos, step, probe, is_ses, nthreads, verbose) | ||
class res(object): | ||
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag") | ||
__repr__ = _swig_repr | ||
pos = property(_SERD.res_pos_get, _SERD.res_pos_set) | ||
next = property(_SERD.res_next_get, _SERD.res_next_set) | ||
|
||
def __init__(self): | ||
_SERD.res_swiginit(self, _SERD.new_res()) | ||
__swig_destroy__ = _SERD.delete_res | ||
|
||
# Register res in _SERD: | ||
_SERD.res_swigregister(res) | ||
|
||
|
||
def create(pos): | ||
return _SERD.create(pos) | ||
|
||
def insert(head, res_new): | ||
return _SERD.insert(head, res_new) | ||
|
||
def _interface(grid, pdb, atoms, reference, sincos, step, probe, nthreads, verbose): | ||
return _SERD._interface(grid, pdb, atoms, reference, sincos, step, probe, nthreads, verbose) | ||
|
||
|
Oops, something went wrong.