Merge pull request #267 from LCR-BCCRC/sp_exome_fix

Sp exome fix
LCR-BCCRC · May 15, 2023 · 41f2465 · 41f2465
2 parents 6278ade + 68e368d
commit 41f2465
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/modules/sigprofiler/1.0/src/python/run_extractor.py b/modules/sigprofiler/1.0/src/python/run_extractor.py
@@ -8,17 +8,17 @@ def main():
     """ Performs NMF decomposition with provided matrix """
     args = parse_arguments()
 
-    exome.param = False
+    exome_param = False
     if args.exome == 'True':
-        exome.param = True
+        exome_param = True
 
     sig.sigProfilerExtractor(input_type = 'matrix', \
                              output = args.output, \
                              input_data = args.input_data, \
                              reference_genome = args.ref, \
                              opportunity_genome = args.ref, \
                              context_type = args.context_type, \
-                             exome = exome.param, \
+                             exome = exome_param, \
                              minimum_signatures = args.minimum_signatures, \
                              maximum_signatures = args.maximum_signatures, \
                              nmf_replicates = args.nmf_replicates, \