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put the legacy&update notice into README
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exaexa committed Jun 8, 2024
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13 changes: 12 additions & 1 deletion README.md
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This package provides constraint-based reconstruction and analysis tools for
exa-scale metabolic modeling in Julia.

**This repository contains the "legacy" version of COBREXA (version 1.x).
COBREXA development is continuing at
[github.com/COBREXA](https://github.com/COBREXA/) with a much-improved version
2.x, and many other new packages. Unless you need version 1.x for compatibility
reasons, we recommend switching to version 2!**

## How to get started

### Prerequisites and requirements
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You can install COBREXA from Julia repositories. Start `julia`, **press `]`** to
switch to the Packaging environment, and type:
```
add COBREXA
add COBREXA@1
```

(Note: the above command installs the "1.x" version of COBREXA, which is what
is described in this repository and the associated documentation. If you are
not limited by compatibility and similar reasons, consider updating to [COBREXA
2](https://github.com/COBREXA/COBREXA.jl).)

You also need to install your favorite solver supported by `JuMP.jl` (such as
Gurobi, Mosek, CPLEX, GLPK, Clarabel, etc., see a [list
here](https://jump.dev/JuMP.jl/stable/installation/#Supported-solvers)). For
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