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Fixed error extracting data from stream topology.
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Brad Whitlock committed Jul 29, 2021
1 parent 5354912 commit 7644218
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Showing 8 changed files with 495 additions and 41 deletions.
15 changes: 2 additions & 13 deletions src/libs/blueprint/conduit_blueprint_mesh_partition.cpp
View file
Expand Up @@ -1896,7 +1896,7 @@ partitioner::get_vertex_ids_for_element_ids(const conduit::Node &n_topo,
{
auto npts = sizes[element_ids[i]];
for(index_t j = 0; j < npts; j++)
vertex_ids.insert(stream[offsets[i] + j]);
vertex_ids.insert(stream[offsets[element_ids[i]] + j]);
}
}
else
Expand Down Expand Up @@ -1993,13 +1993,6 @@ partitioner::extract(size_t idx, const conduit::Node &n_mesh) const
get_vertex_ids_for_element_ids(n_topo, element_ids, vertex_ids_set);
index_t_set_to_vector(vertex_ids_set, vertex_ids);

#if 0
cout << "vertex_ids=";
for(size_t i = 0; i < vertex_ids.size(); i++)
cout << vertex_ids[i] << ", ";
cout << endl;
#endif

// Create a new coordset consisting of the selected vertex ids.
create_new_explicit_coordset(n_coordset, vertex_ids, n_new_coordsets[csname]);

Expand Down Expand Up @@ -2238,12 +2231,8 @@ partitioner::unstructured_topo_from_unstructured(const conduit::Node &n_topo,
// vertex_ids contains the list of old vertex ids that our selection uses
// from the old coordset. It can serve as a new to old map.
std::map<index_t,index_t> old2new;
//cout << "old2new=" << endl;
for(size_t i = 0; i < vertex_ids.size(); i++)
{
//cout << " " << vertex_ids[i] << "-> " << i << endl;
old2new[vertex_ids[i]] = static_cast<index_t>(i);
}

conduit::blueprint::mesh::utils::ShapeType shape(n_topo);
std::vector<index_t> new_conn;
Expand Down Expand Up @@ -2435,7 +2424,7 @@ partitioner::unstructured_topo_from_unstructured(const conduit::Node &n_topo,
// Save the element's vertices into the new stream.
for(index_t j = 0; j < npts; j++)
{
auto vid = stream[offsets[i] + j];
auto vid = stream[offsets[element_ids[i]] + j];
new_conn.push_back(old2new[vid]);
}

Expand Down
10 changes: 1 addition & 9 deletions src/libs/blueprint/conduit_blueprint_mesh_utils.cpp
View file
Expand Up @@ -1172,9 +1172,6 @@ topology::unstructured::generate_offsets(const Node &n,

std::vector<index_t> offsets;
index_t offset = 0, elemid = 0;
#if 1
cout << "$$$$ stream_ids.size() = " << n_stream_ids.dtype().number_of_elements() << endl;
#endif
for(index_t j = 0; j < n_stream_ids.dtype().number_of_elements(); j++)
{
// Get the j'th elements from n_stream_ids, n_element_counts
Expand All @@ -1192,12 +1189,7 @@ cout << "$$$$ stream_ids.size() = " << n_stream_ids.dtype().number_of_elements()
elemid++;
}
}
#if 1
cout << "$$$$ offsets = {" << endl;
for(size_t i = 0 ; i < offsets.size(); i++)
cout << offsets[i] << ", ";
cout << "}" << endl;
#endif

Node off_node;
off_node.set_external(offsets);
off_node.to_data_type(int_dtype.id(), dest);
Expand Down
39 changes: 39 additions & 0 deletions src/tests/blueprint/baselines/t_blueprint_mesh_partition/quads_end_tris_explicit_2d_00.yaml
View file
@@ -0,0 +1,39 @@

state:
time: 3.1415
cycle: 100
coordsets:
coords:
type: "explicit"
values:
x: [-10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0]
y: [-10.0, -10.0, -10.0, -10.0, -10.0, -10.0, -10.0, -10.0, -10.0, -10.0, -10.0, -8.0, -8.0, -8.0, -8.0, -8.0, -8.0, -8.0, -8.0, -8.0, -8.0, -8.0, -6.0, -6.0, -6.0, -6.0, -6.0, -6.0, -6.0, -6.0, -6.0, -6.0, -6.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -2.0, -2.0, -2.0, -2.0, -2.0, -2.0, -2.0, -2.0, -2.0, -2.0, -2.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 2.0, 2.0, 2.0, 2.0, 2.0, 2.0, 2.0, 2.0, 2.0, 2.0, 2.0, 4.0, 4.0, 4.0, 4.0, 4.0, 4.0, 4.0, 4.0, 4.0, 4.0, 4.0, 6.0, 6.0, 6.0, 6.0, 6.0, 6.0, 6.0, 6.0, 6.0, 6.0, 6.0, 8.0, 8.0, 8.0, 8.0, 8.0, 8.0, 8.0, 8.0, 8.0, 8.0, 8.0, 10.0, 10.0, 10.0, 10.0, 10.0, 10.0, 10.0, 10.0, 10.0, 10.0, 10.0]
topologies:
mesh:
type: "unstructured"
coordset: "coords"
elements:
element_types:
quads:
stream_id: 9
shape: "quad"
tris:
stream_id: 5
shape: "tri"
element_index:
stream_ids: [9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5]
element_counts: [1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2]
stream: [0, 11, 12, 1, 1, 12, 2, 12, 13, 2, 2, 13, 14, 3, 3, 14, 4, 14, 15, 4, 4, 15, 16, 5, 5, 16, 6, 16, 17, 6, 6, 17, 18, 7, 7, 18, 8, 18, 19, 8, 8, 19, 20, 9, 9, 20, 10, 20, 21, 10, 11, 22, 23, 12, 12, 23, 13, 23, 24, 13, 13, 24, 25, 14, 14, 25, 15, 25, 26, 15, 15, 26, 27, 16, 16, 27, 17, 27, 28, 17, 17, 28, 29, 18, 18, 29, 19, 29, 30, 19, 19, 30, 31, 20, 20, 31, 21, 31, 32, 21, 22, 33, 34, 23, 23, 34, 24, 34, 35, 24, 24, 35, 36, 25, 25, 36, 26, 36, 37, 26, 26, 37, 38, 27, 27, 38, 28, 38, 39, 28, 28, 39, 40, 29, 29, 40, 30, 40, 41, 30, 30, 41, 42, 31, 31, 42, 32, 42, 43, 32, 33, 44, 45, 34, 34, 45, 35, 45, 46, 35, 35, 46, 47, 36, 36, 47, 37, 47, 48, 37, 37, 48, 49, 38, 38, 49, 39, 49, 50, 39, 39, 50, 51, 40, 40, 51, 41, 51, 52, 41, 41, 52, 53, 42, 42, 53, 43, 53, 54, 43, 44, 55, 56, 45, 45, 56, 46, 56, 57, 46, 46, 57, 58, 47, 47, 58, 48, 58, 59, 48, 48, 59, 60, 49, 49, 60, 50, 60, 61, 50, 50, 61, 62, 51, 51, 62, 52, 62, 63, 52, 52, 63, 64, 53, 53, 64, 54, 64, 65, 54, 55, 66, 67, 56, 56, 67, 57, 67, 68, 57, 57, 68, 69, 58, 58, 69, 59, 69, 70, 59, 59, 70, 71, 60, 60, 71, 61, 71, 72, 61, 61, 72, 73, 62, 62, 73, 63, 73, 74, 63, 63, 74, 75, 64, 64, 75, 65, 75, 76, 65, 66, 77, 78, 67, 67, 78, 68, 78, 79, 68, 68, 79, 80, 69, 69, 80, 70, 80, 81, 70, 70, 81, 82, 71, 71, 82, 72, 82, 83, 72, 72, 83, 84, 73, 73, 84, 74, 84, 85, 74, 74, 85, 86, 75, 75, 86, 76, 86, 87, 76, 77, 88, 89, 78, 78, 89, 79, 89, 90, 79, 79, 90, 91, 80, 80, 91, 81, 91, 92, 81, 81, 92, 93, 82, 82, 93, 83, 93, 94, 83, 83, 94, 95, 84, 84, 95, 85, 95, 96, 85, 85, 96, 97, 86, 86, 97, 87, 97, 98, 87, 88, 99, 100, 89, 89, 100, 90, 100, 101, 90, 90, 101, 102, 91, 91, 102, 92, 102, 103, 92, 92, 103, 104, 93, 93, 104, 94, 104, 105, 94, 94, 105, 106, 95, 95, 106, 96, 106, 107, 96, 96, 107, 108, 97, 97, 108, 98, 108, 109, 98, 99, 110, 111, 100, 100, 111, 101, 111, 112, 101, 101, 112, 113, 102, 102, 113, 103, 113, 114, 103, 103, 114, 115, 104, 104, 115, 105, 115, 116, 105, 105, 116, 117, 106, 106, 117, 107, 117, 118, 107, 107, 118, 119, 108, 108, 119, 109, 119, 120, 109]
fields:
braid:
association: "vertex"
type: "scalar"
topology: "mesh"
values: [2.00961335163232, 3.91936876247049, 1.84819870991097, -1.93780546900468, -3.48853305073499, -1.61074103652274, 1.26329389071927, 2.32325176908871, 1.33741433181842, -0.0346915803135985, -0.814560002066095, -1.62377070473108, 0.453574496665842, 1.13575807082679, 1.20416973102031, 1.54249688755568, 1.1813398174337, -1.33308217479166, -4.90013020898802, -5.84362701021767, -2.00414151836248, 3.85490090225047, -2.90890667116786, -3.04810973534946, -3.96334042296079, -3.29540753658712, 0.331984087910082, 4.58700673596295, 5.41562711724745, 1.76504901016238, -2.90814604103462, -4.55667309151039, -3.13613707528592, -0.536327253391785, -1.81723284220346, -5.22148293647595, -7.49828759830476, -5.96915604563057, -2.07012184179625, 0.234597515771756, -0.618204596995657, -1.86242150302242, -0.134109700645325, 3.8724495453656, 3.52756770328428, 3.15343225725758, -0.17469471964249, -3.20077806815674, -2.94662758124811, -0.613324929630531, -0.13515490466245, -3.07264697076782, -6.45159249290849, -6.49961608569292, -3.54192049332478, 5.87225735170648, 6.3075424909428, 3.73699235935842, 1.41506268784999, 2.39583616600613, 5.50534774299744, 6.73772458986095, 4.42783874596915, 1.50510345808268, 1.77279252138089, 4.94614110342372, 4.70313733886991, 4.32900152717727, 1.00087426108782, -2.0252092892523, -1.77105894923239, 0.562243603112749, 1.04041362002136, -1.89707830605872, -5.27602352166235, -5.32404666993955, -2.36635053365828, 1.365784806355, 0.0848792003950716, -3.31937052588614, -5.5961744986321, -4.06704212963352, -0.168007164998516, 2.136712791259, 1.28391103927988, 0.0396941487174405, 1.76800550270515, 5.77456380177134, -1.00679389597287, -1.14599635573058, -2.061226218628, -1.39329273480042, 2.23409880757976, 6.48912055558889, 7.31773950735424, 3.66715999980367, -1.00603587029959, -2.65456281776341, -1.23402572441608, -0.448199635088183, 1.62914600716817, 2.31132943693015, 2.37974015516495, 2.71806596671795, 2.35690804547093, -0.15751350242694, -3.72455978106259, -4.66805448721223, -0.82856796963002, 5.03047353370436, 2.00961402595266, 3.91936883548631, 1.84819760650622, -1.93780724810937, -3.48853409316301, -1.61074026592305, 1.26329598085936, 2.32325323630502, 1.33741344199798, -0.0346945628199731, -0.814562706228405]
vel:
association: "vertex"
type: "vector"
topology: "mesh"
values:
u: [-10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0]
v: [-10.0, -10.0, -10.0, -10.0, -10.0, -10.0, -10.0, -10.0, -10.0, -10.0, -10.0, -8.0, -8.0, -8.0, -8.0, -8.0, -8.0, -8.0, -8.0, -8.0, -8.0, -8.0, -6.0, -6.0, -6.0, -6.0, -6.0, -6.0, -6.0, -6.0, -6.0, -6.0, -6.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -2.0, -2.0, -2.0, -2.0, -2.0, -2.0, -2.0, -2.0, -2.0, -2.0, -2.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 2.0, 2.0, 2.0, 2.0, 2.0, 2.0, 2.0, 2.0, 2.0, 2.0, 2.0, 4.0, 4.0, 4.0, 4.0, 4.0, 4.0, 4.0, 4.0, 4.0, 4.0, 4.0, 6.0, 6.0, 6.0, 6.0, 6.0, 6.0, 6.0, 6.0, 6.0, 6.0, 6.0, 8.0, 8.0, 8.0, 8.0, 8.0, 8.0, 8.0, 8.0, 8.0, 8.0, 8.0, 10.0, 10.0, 10.0, 10.0, 10.0, 10.0, 10.0, 10.0, 10.0, 10.0, 10.0]
49 changes: 49 additions & 0 deletions src/tests/blueprint/baselines/t_blueprint_mesh_partition/quads_end_tris_explicit_2d_01.yaml
View file
@@ -0,0 +1,49 @@

coordsets:
coords:
type: "explicit"
values:
x: [-10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0, 6.0, 8.0, 10.0]
y: [-10.0, -10.0, -10.0, -10.0, -10.0, -10.0, -10.0, -10.0, -10.0, -10.0, -10.0, -8.0, -8.0, -8.0, -8.0, -8.0, -8.0, -8.0, -8.0, -8.0, -8.0, -8.0, -6.0, -6.0, -6.0, -6.0, -6.0, -6.0, -6.0, -6.0, -6.0, -6.0, -6.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -2.0, -2.0, -2.0, -2.0, -2.0, -2.0, -2.0, -2.0, -2.0, -2.0, -2.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
topologies:
mesh:
type: "unstructured"
coordset: "coords"
elements:
element_types:
quads:
stream_id: 9
shape: "quad"
tris:
stream_id: 5
shape: "tri"
element_index:
stream_ids: [9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5, 9, 5]
element_counts: [1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2]
stream: [0, 11, 12, 1, 1, 12, 2, 12, 13, 2, 2, 13, 14, 3, 3, 14, 4, 14, 15, 4, 4, 15, 16, 5, 5, 16, 6, 16, 17, 6, 6, 17, 18, 7, 7, 18, 8, 18, 19, 8, 8, 19, 20, 9, 9, 20, 10, 20, 21, 10, 11, 22, 23, 12, 12, 23, 13, 23, 24, 13, 13, 24, 25, 14, 14, 25, 15, 25, 26, 15, 15, 26, 27, 16, 16, 27, 17, 27, 28, 17, 17, 28, 29, 18, 18, 29, 19, 29, 30, 19, 19, 30, 31, 20, 20, 31, 21, 31, 32, 21, 22, 33, 34, 23, 23, 34, 24, 34, 35, 24, 24, 35, 36, 25, 25, 36, 26, 36, 37, 26, 26, 37, 38, 27, 27, 38, 28, 38, 39, 28, 28, 39, 40, 29, 29, 40, 30, 40, 41, 30, 30, 41, 42, 31, 31, 42, 32, 42, 43, 32, 33, 44, 45, 34, 34, 45, 35, 45, 46, 35, 35, 46, 47, 36, 36, 47, 37, 47, 48, 37, 37, 48, 49, 38, 38, 49, 39, 49, 50, 39, 39, 50, 51, 40, 40, 51, 41, 51, 52, 41, 41, 52, 53, 42, 42, 53, 43, 53, 54, 43, 44, 55, 56, 45, 45, 56, 46, 56, 57, 46, 46, 57, 58, 47, 47, 58, 48, 58, 59, 48, 48, 59, 60, 49, 49, 60, 50, 60, 61, 50, 50, 61, 62, 51, 51, 62, 52, 62, 63, 52, 52, 63, 64, 53, 53, 64, 54, 64, 65, 54]
state:
time: 3.1415
cycle: 100
fields:
braid:
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