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move parmetis tar here #131

Merged
merged 2 commits into from
Jul 18, 2022
Merged

move parmetis tar here #131

merged 2 commits into from
Jul 18, 2022

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kevinhkhuynh
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@kevinhkhuynh
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Issue #129

@kevinhkhuynh
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Issue #127

@siuwuncheung siuwuncheung self-requested a review July 16, 2022 01:43
@siuwuncheung
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Got the same issue of parmetis in master branch. Just verified that this update works.

@kevinhkhuynh kevinhkhuynh merged commit a7bd65b into master Jul 18, 2022
@kevinhkhuynh kevinhkhuynh deleted the parmetis_local branch July 18, 2022 15:53
siuwuncheung pushed a commit that referenced this pull request Aug 9, 2022
* move parmetis tar here

* add mfem parallel num compile
siuwuncheung added a commit that referenced this pull request Sep 23, 2022
* Initialize

* set up shift nu dmd

* Add state mean offset, and derivative mean offset for NonuniformDMD

* save offset vectors

* save phi inverse

* Add back in line

* Fix the offset in computeDMDSnapshotPair

* fix typo

* Fix a bug

* Remove redundant lines

* Remove redundant lines

* Remove redundant line

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant line

* Attempt to debug

* Add initial state as offset

* fix adaptive dmd constructor

* add new W0 columns

* fix bug

* Q transpose mult

* fix transpose mult

* add comment dylan requested

* add comment

* Orthogonalize to play safe

* Add derivative prediction

* Allow any offsets

* Fix DMD derived class for working for both Adaptive DMD and Nonuniform
DMD

* Fix bug

* Minor fix

* Minor fix

* Add state mean offset, and derivative mean offset for NonuniformDMD

* save phi inverse

* Add back in line

* Fix the offset in computeDMDSnapshotPair

* fix typo

* Fix a bug

* Remove redundant lines

* Remove redundant lines

* Remove redundant line

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant line

* Attempt to debug

* Add initial state as offset

* fix adaptive dmd constructor

* add new W0 columns

* fix bug

* Q transpose mult

* fix transpose mult

* add comment dylan requested

* add comment

* updated mixed nonlinear diffusion (#121)

* updated mixed nonlinear diffusion

* remove prints

* remove extra line

* remove dash

* remove typo line

* Add citation file (#130)

* move parmetis tar here (#131)

* move parmetis tar here

* add mfem parallel num compile

* Orthogonalize to play safe

* csv databse bug (#133)

* Add derivative prediction

* Allow any offsets

* Fix DMD derived class for working for both Adaptive DMD and Nonuniform
DMD

* Fix bug

* Minor fix

* Minor fix

* Differential Evolution (#132)

* add differential evolution plus example with greedy sampling

* stylize

* add functional header

* update title

* Add alpha to example

* remove default param

* small updates

* remove precision

* add parameters

* update comment

* make de ranges parameters

* Add greedy example

* add rm rf line

* Add comments

* remove non greedy example

* parallel print

* Add iteration print

* pr updates

* update description

* update desc

* visualize de example (#135)

* visualize example de

* semicolon

* fix bugs

* Revision to comments

* Replace mult

* Minor revision

* Replace mult

Co-authored-by: Cheung <cheung26@kidamasaomi.llnl.gov>
Co-authored-by: Kevin <huynh24@llnl.gov>
siuwuncheung added a commit that referenced this pull request Nov 2, 2022
* Initialize

* set up shift nu dmd

* Add state mean offset, and derivative mean offset for NonuniformDMD

* save offset vectors

* save phi inverse

* Add back in line

* Fix the offset in computeDMDSnapshotPair

* fix typo

* Fix a bug

* Remove redundant lines

* Remove redundant lines

* Remove redundant line

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant line

* Attempt to debug

* Add initial state as offset

* fix adaptive dmd constructor

* add new W0 columns

* fix bug

* Q transpose mult

* fix transpose mult

* add comment dylan requested

* add comment

* Orthogonalize to play safe

* Add derivative prediction

* Allow any offsets

* Fix DMD derived class for working for both Adaptive DMD and Nonuniform
DMD

* Fix bug

* Minor fix

* Minor fix

* Add state mean offset, and derivative mean offset for NonuniformDMD

* save phi inverse

* Add back in line

* Fix the offset in computeDMDSnapshotPair

* fix typo

* Fix a bug

* Remove redundant lines

* Remove redundant lines

* Remove redundant line

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant lines

* Remove redundant line

* Attempt to debug

* Add initial state as offset

* fix adaptive dmd constructor

* add new W0 columns

* fix bug

* Q transpose mult

* fix transpose mult

* add comment dylan requested

* add comment

* updated mixed nonlinear diffusion (#121)

* updated mixed nonlinear diffusion

* remove prints

* remove extra line

* remove dash

* remove typo line

* Add citation file (#130)

* move parmetis tar here (#131)

* move parmetis tar here

* add mfem parallel num compile

* Orthogonalize to play safe

* csv databse bug (#133)

* Add derivative prediction

* Allow any offsets

* Fix DMD derived class for working for both Adaptive DMD and Nonuniform
DMD

* Fix bug

* Minor fix

* Minor fix

* Differential Evolution (#132)

* add differential evolution plus example with greedy sampling

* stylize

* add functional header

* update title

* Add alpha to example

* remove default param

* small updates

* remove precision

* add parameters

* update comment

* make de ranges parameters

* Add greedy example

* add rm rf line

* Add comments

* remove non greedy example

* parallel print

* Add iteration print

* pr updates

* update description

* update desc

* visualize de example (#135)

* visualize example de

* semicolon

* fix bugs

* Revision to comments

* Replace mult

* Minor revision

* Replace mult

* Initialize

* Modify

* Minor changes

* Add time offset option

* Add offset option

* Add nonuniform DMD

* Add nonuniform DMD to time windowing CSV

* Reorder

* Fix a bug

* Fix a bug

* Add timer

* Relocate timer

* Initiate parametric distance windowing

* Rename some variable

* Some minor edits

* Fix typos

* Remove time windowing examples in distance windowing scripts

* Add verify

* Slight changes

* Add verify

* Fix typo

* Fix time windowing CSV example

* Update example commands

* Remove redundant commands

* astyle

Co-authored-by: Cheung <cheung26@kidamasaomi.llnl.gov>
Co-authored-by: Kevin <huynh24@llnl.gov>
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3 participants