Github actions (#836)

* testing gh * test install * basic * almost there * fake * test name * coveralls * note * note * OSs and PYs * OSs and PYs * OSs and PYs * no mac for now * just mac, testing * just mac, testing * just mac, testing * just mac, testing * just mac, testing * just mac, testing * just mac, testing * just mac, testing * just mac, testing * just mac, testing * just mac, testing * just mac, testing * just mac, testing * mac and ubuntu * mac and ubuntu * mac and ubuntu * mac and ubuntu * mac and ubuntu * mac and ubuntu * mac and ubuntu * mac and ubuntu * mac and ubuntu * mac and ubuntu * class... * class... * class... * class... * class... * class... * class... * swig... * cleanup * oops * simpler class * c tests * c tests * MJ comments * master
LSSTDESC · Dec 8, 2020 · 766ca03 · 766ca03
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commit 766ca03
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diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -0,0 +1,136 @@
+name: continuous-integration
+on:
+  push:
+    branches:
+      - main
+      - master
+      - releases/*
+  pull_request:
+    branches:
+      - main
+      - master
+      - releases/*
+jobs:
+  build:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ ubuntu-latest ]
+        py: [ 3.6, 3.7, 3.8, 3.9 ]
+        CC: [ gcc ]
+
+        # Check macos too
+        include:
+          - os: macos-latest
+            py: 3.7
+
+    steps:
+        - uses: actions/checkout@v2
+
+        - name: Set up Python ${{ matrix.py }}
+          uses: actions/setup-python@v2
+          with:
+            python-version: ${{ matrix.py }}
+
+        - name: Install GFortran macOS
+          # brew returns a failure exit code if
+          # the thing is already installed and
+          # current. Hence the `|| true` statement
+          if: matrix.os == 'macos-latest'
+          run: |
+            brew cask install gfortran || true
+
+        - name: Install GSL, FFTW, SWIG (macos)
+          if: matrix.os == 'macos-latest'
+          run: |
+            brew install fftw || true
+            brew install gsl || true
+            brew install swig || true
+
+        - name: Install GSL, FFTW (linux)
+          if: matrix.os == 'ubuntu-latest'
+          run: |
+            sudo -H apt-get install libgsl-dev libfftw3-dev
+
+        - name: Install python dependencies
+          run: |
+            python -m pip install -U pip
+            pip install -U numpy
+            pip install -U scipy
+            pip install -U pytest
+            pip install -U pytest-cov
+            pip install -U fast-pt
+            pip install -U camb
+            pip install -U isitgr
+            pip install -U cython
+            pip install -U flake8
+
+        - name: Install CLASS (linux)
+          if: matrix.os == 'ubuntu-latest'
+          run: |
+            git clone -b v2.7.2 --single-branch --depth 1 "https://github.com/lesgourg/class_public.git"
+            cd class_public
+            make
+
+        - name: Install CLASS (macos)
+          if: matrix.os == 'macos-latest'
+          run: |
+            git clone -b v2.7.2 --single-branch --depth 1 "https://github.com/lesgourg/class_public.git"
+            cd class_public
+            make CC=gcc-9
+
+        - name: Flake
+          run: |
+            flake8 pyccl
+            flake8 --exclude=data benchmarks
+
+        - name: Build CCL
+          run: |
+            python setup.py build
+            python setup.py develop
+
+        - name: C unit tests
+          run: |
+            cd build
+            make -j4
+            CLASS_PARAM_DIR=./extern/share/class/ OMP_NUM_THREADS=2 ./check_ccl
+
+        - name: Python unit tests
+          run: OMP_NUM_THREADS=2 pytest -vv pyccl --cov=pyccl
+
+        - name: Benchmarks
+          run: OMP_NUM_THREADS=2 pytest -vv benchmarks --cov=pyccl --cov-append
+
+        - name: Coveralls
+          env:
+            GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          run: |
+            pip install -U coveralls
+            coveralls
+
+        - name: Cache pip, brew
+          uses: actions/cache@v2
+          with:
+            path: |
+              ~/.cache/pip
+              $HOME/Library/Caches/Homebrew
+              /usr/local/Cellar
+            key: ${{ runner.os }}-${{ matrix.py }}-cache
+            restore-keys: |
+              ${{ runner.os }}-${{ matrix.py }}-cache
+              ${{ runner.os }}-
+
+  build-doc-only-ubuntu:
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v2
+      - name: Install prereq using apt
+        run: |
+
+          sudo apt install texlive texlive-bibtex-extra texlive-science texlive-publishers latexmk python3-sphinx python3-sphinx-rtd-theme python3-nbconvert python3-jupyter-client jupyter-client jupyter-nbconvert sphinx-common pandoc python3-setuptools -y
+          sudo pip3 install mkauthlist
+      - name: Building docs
+        run: |
+          cd doc/0000-ccl_note
+          make
diff --git a/.travis.yml b/.travis.yml
diff --git a/.travis/install.sh b/.travis/install.sh
diff --git a/.travis/install_class_linux.sh b/.travis/install_class_linux.sh
diff --git a/.travis/install_class_osx.sh b/.travis/install_class_osx.sh
diff --git a/.travis/install_texlive_linux.sh b/.travis/install_texlive_linux.sh
diff --git a/.travis/texlive/texlive.profile b/.travis/texlive/texlive.profile