- Improved performance by:
- Slight rewrites in the multiple FASTQ pipeline. Cases with one, two, three
and multiple FASTQ files are now handled separately. This vastly improves
the speed of especially the single and paired end instances. - Rewriting the filters in C.
- Slight rewrites in the multiple FASTQ pipeline. Cases with one, two, three
- Added logging with basic stats. When
--verbose
is set, the counts for
individual filters are reported. With--quiet
logging can be turned off.