Merge pull request #63 from LUMC/conda

Add information on how to install on conda.

.github/release_checklist.md

@@ -6,12 +6,16 @@ Release checklist
   - [ ] Set version to a stable number.
   - [ ] Change current development version in `HISTORY.rst` to stable version.
 - [ ] Merge the release branch into `master`
-- [ ] Create a test pypi package from the release branch. ([Instructions.](
+- [ ] Create a test pypi package from the master branch. ([Instructions.](
 https://packaging.python.org/tutorials/packaging-projects/#generating-distribution-archives
 ))
+- [ ] Install the packages from the test pypi repository to see if they work.
 - [ ] Created an annotated tag with the stable version number. Include changes 
 from history.rst.
 - [ ] Push tag to remote.
 - [ ] Push tested packages to pypi
 - [ ] merge `master` branch back into `develop`.
-- [ ] Add updated version number to develop
+- [ ] Add updated version number to develop
+- [ ] Update the package on bioconda
+- [ ] Build the new tag on readthedocs. Only build the last patch version of
+each minor version. So `1.1.1` and `1.2.0` but not `1.1.0`, `1.1.1` and `1.2.0`.

HISTORY.rst

@@ -7,10 +7,12 @@ Changelog
 .. NOTE: This document is user facing. Please word the changes in such a way
 .. that users understand how the changes affect the new version.
 
-version 1.2.0
+version 1.2.0-dev
 ---------------------------
 + Added ``--kwd`` as alias for ``--keep-workflow-wd``. Notify the user of
   deletion of temporary directories and logs.
++ Released pytest-workflow as a `conda package on bioconda
+  <https://bioconda.github.io/recipes/pytest-workflow/README.html>`_.
 
 version 1.1.0
 ---------------------------

README.rst

@@ -8,10 +8,18 @@ pytest-workflow
   :target: https://pypi.org/project/pytest-workflow/
   :alt:
 
+.. image:: https://img.shields.io/conda/v/bioconda/pytest-workflow.svg
+  :target: https://https://bioconda.github.io/recipes/pytest-workflow/README.html
+  :alt:
+
 .. image:: https://img.shields.io/pypi/pyversions/pytest-workflow.svg
   :target: https://pypi.org/project/pytest-workflow/
   :alt:
 
+.. image:: https://img.shields.io/pypi/l/pytest-workflow.svg
+  :target: https://github.com/LUMC/pytest-workflow/blob/master/LICENSE
+  :alt:
+
 .. image:: https://api.codacy.com/project/badge/Grade/f8bc14b0a507429eac7c06194fafcd59
   :target: https://www.codacy.com/app/LUMC/pytest-workflow?utm_source=github.com&utm_medium=referral&utm_content=LUMC/pytest-workflow&utm_campaign=Badge_Grade
   :alt:
@@ -41,6 +49,12 @@ and 3.7. Python 2 is not supported.
 - Create a ``tests`` directory in the root of your repository.
 - Create your test yaml files in the ``tests`` directory.
 
+Pytest-workflow is also available as a `conda package on bioconda
+<https://bioconda.github.io/recipes/pytest-workflow/README.html>`_. Follow
+`these instructions <https://bioconda.github.io/index.html#set-up-channels>`_
+to set up channels properly in order to use bioconda. After that ``conda
+install pytest-workflow`` can be used to install pytest-workflow.
+
 Quickstart
 ==========
 

docs/installation.rst

@@ -26,3 +26,11 @@ On Ubuntu or Debian:
     environment will not work with ``pytest-workflow`` because this will start
     the python2 version of ``pytest``. This is because python2 is the default
     python on any distribution released before January 1st 2020.
+
+Pytest-workflow is also available as a `conda package on bioconda
+<https://bioconda.github.io/recipes/pytest-workflow/README.html>`_.
+To install with conda:
+
+- `Set up conda to use the bioconda channel
+  <https://bioconda.github.io/index.html#set-up-channels>`_
+- ``conda install pytest-workflow``

setup.py

@@ -43,6 +43,7 @@
         "Programming Language :: Python :: 3.5",
         "Programming Language :: Python :: 3.6",
         "Programming Language :: Python :: 3.7",
+        "Development Status :: 5 - Production/Stable",
         "License :: OSI Approved :: "
         "GNU Affero General Public License v3 or later (AGPLv3+)",
         "Framework :: Pytest",