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Microbiome Helper

An assortment of scripts to help process and automate various microbiome and metagenomic bioinformatic tools. We provide workflows, tutorials and a virtual box image to help researchers process microbial data.

Our paper on Microbiome Helper has been published in mSystems. Please cite this paper if you use our repository:

Comeau AM, Douglas GM, Langille MGI. 2017. Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research. mSystems 2(1): e00127-16; DOI: 10.1128/mSystems.00127-16    

Please see our wiki site for more info.

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A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

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