This repository is for code and analysis that accompanies: Chang, C-H., Gregory, L.E., Gordon, K.E., Meiklejohn, C.D., Larracuente, A.M. 2021. Unique structure and positive selection promote the rapid divergence of Drosophila Y chromosomes. BioRxiv 8/16/21 https://doi.org/10.1101/2021.08.16.456461.
Please contact cchang2@fredhutch.org or alarracu@bio.rochester.edu with questions.
Links to download assemblies: D. simulans assembly https://drive.google.com/file/d/1xIYVlXvzg54-tIqD0z6hwKRZjaIwhsR_/view?usp=sharing
D. mauritiana assembly https://drive.google.com/file/d/13MhrI3K7qhsrszcki6Gtjttu2zGq3eYU/view?usp=sharing
D. sechellia assembly https://drive.google.com/file/d/1V7EzjtauBEPP6NguYTf-598bJrNmpdgz/view?usp=sharing