Anelloviruses

This repository contains scripts:

• to create and maintain a database of complete Alphatorquevirus (TTV) ORF1 sequence annotated at species and genotype levels for metagenomic usage.
• to analyze High-Throughput Sequencing data with the database mentioned above.

Directories:

FASTA/           .fasta version of the database
CSV/              .csv (comma-separated values) version of the database
snap-db/        database for mapping HTS data
src/                scripts

Database format and specificity:

version: Alphatorquevirus_2022.1

FASTA format:

>GENBANK,GENUS=<>,GROUP=<>,SPECIES=<>,GENOTYPE=<>,HOST=<>
Sequence

CSV format :

GENBANK,GENUS,GROUP,SPECIES,GENOTYPE,HOST,Sequence

Dependencies:

muscle
snap-aligner