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LeeBergstrand edited this page Apr 3, 2014
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This repository contains series of small Bio-Python scripts for downloading sequence data off NCBI's Genbank.
Here is a short description of each script:
- [GetCDS.py] (https://github.com/LeeBergstrand/Genbank-Downloaders/wiki/GetCDS.py) - Takes a list of genbank accessions and downloads the coding sequences for each accession.
- [GetNucleotide.py] (https://github.com/LeeBergstrand/Genbank-Downloaders/wiki/GetNucleotide.py) - Takes a list of genbank accessions and downloads a nucleotide sequence for each accession.
- [Get16s.py] (https://github.com/LeeBergstrand/Genbank-Downloaders/wiki/Get16s.py) - Takes a list of genbank accessions and downloads a 16S gene for each accession.
- [GetOrganism.py] (https://github.com/LeeBergstrand/Genbank-Downloaders/wiki/GetOrganism.py) - Finds the taxa of each accession number in given list.