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@LeifAnderssonLab

Leif Andersson Lab

We use genetics, genomics, and bioinformatics to advance our understanding of the genetic mechanisms underlying phenotypic variation and evolution.

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  1. Atlantic_herring_SDR Atlantic_herring_SDR Public

    Forked from nimarafati/Atlantic_herring_SDR

    This repository provides codes and analyses pipeline for discovery of Atlantic Herring sex chromosome

    R

  2. Rabbit_Domestication_Brain_RNA_Seq Rabbit_Domestication_Brain_RNA_Seq Public

    Forked from nimarafati/Rabbit_Domestication_Brain_RNA_Seq

    IN this repository you find codes for analysis of RNA-seq data generated from four brain parts published in ......

    R

  3. Rabbit-speciation Rabbit-speciation Public

    Forked from nimarafati/Rabbit-speciation

    Rabbit speciation analysis pipeline (Rafati et al. 2017)

    R

  4. Population-analysis-with-pooled-data Population-analysis-with-pooled-data Public

    Forked from Fan-Han/Population-analysis-with-pooled-data

    This repository contains scripts for analysing SNP data from pooled sequencing

    R

  5. rhodopsin rhodopsin Public

    Forked from Clupeaharengus/rhodopsin

    analysis of rhodopsin locus in Atlantic herring

    R

  6. eel_code_pub eel_code_pub Public

    Forked from erikenbody/eel_code_pub

    R

Repositories

Showing 10 of 17 repositories
  • Equine_late_greying Public

    Data and code relating to "An intronic copy number variation in Syntaxin 17 determines speed of greying and melanoma incidence in Grey horses"

    LeifAnderssonLab/Equine_late_greying’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 8, 2024
  • Herring_inversions_short_reads Public Forked from MafaldaSFerreira/Atlherr_inversion_evol

    Evolutionary genomics of chromosomal inversions in Atlantic herring

    LeifAnderssonLab/Herring_inversions_short_reads’s past year of commit activity
    R 0 2 0 0 Updated Jul 22, 2024
  • Piscivorous_Baltic_Herring Public

    Files related to "Sympatric genetic differentiation in the extremely abundant, broadcast-spawning Atlantic herring"

    LeifAnderssonLab/Piscivorous_Baltic_Herring’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jul 1, 2024
  • 2023_Horse_mackerel_popgen Public
    LeifAnderssonLab/2023_Horse_mackerel_popgen’s past year of commit activity
    R 0 MIT 1 0 0 Updated Jun 16, 2024
  • Sprat_pool_reseq Public

    Code & files realted to "Limited parallelism in genetic adaptation to brackish water bodies in European sprat and Atlantic herring"

    LeifAnderssonLab/Sprat_pool_reseq’s past year of commit activity
    R 0 MIT 0 0 0 Updated May 16, 2024
  • Atlherr_inversion_evolution Public
    LeifAnderssonLab/Atlherr_inversion_evolution’s past year of commit activity
    R 0 0 0 0 Updated Apr 23, 2024
  • Herring_Inversions Public Forked from minalj365/Herring_Inversions

    Files and code for inversion paper

    LeifAnderssonLab/Herring_Inversions’s past year of commit activity
    R 0 1 0 0 Updated Sep 25, 2023
  • Epaulette_shark_mutation_rate Public

    De novo mutation rate estimation pipeline presented in manuscript: "Pedigree-based estimate of de novo mutation rate in the epaulette shark defines the lowest known vertebrate mutation rate"

    LeifAnderssonLab/Epaulette_shark_mutation_rate’s past year of commit activity
    Shell 0 0 0 0 Updated Aug 23, 2023
  • Ruff_assembly_2022 Public
    LeifAnderssonLab/Ruff_assembly_2022’s past year of commit activity
    0 0 0 0 Updated Jul 12, 2023
  • Arctic_Herring_Introgression Public

    Code and supplementary figures for the manuscript: "A long-standing hybrid population between Pacific and Atlantic herring in a subarctic fjord of Norway"

    LeifAnderssonLab/Arctic_Herring_Introgression’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jan 11, 2023
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