Supplementary data for the manuscript published in Blood, 2021

A comprehensive transcriptome signature of murine hematopoietic stem cell aging

Arthur Flohr Svendsen¹, Daozheng Yang¹, KyungMok Kim², Seka Lazare¹, Erik Zwart¹, Anna Mura-Meszaro², Albertina Ausema¹, Björn von Eijss², Gerald de Haan¹, Leonid V. Bystrykh¹ (l.bystrykh@umcg.nl)

¹European Research Institute for the Biology of Ageing, University Medical Center Groningen, University of Groningen, Antonius Deusinglaan 1, 9713 AV, Groningen, The Netherlands.
²Transcriptional Control of Tissue Homeostasis Lab, Leibniz Institute on Aging, Fritz Lipmann Institute e.V., Beutenbergstr. 11,07745 Jena, Germany

Mostly python scripts by biologist for biologists

Details are in the branches

All details are in branches. Branch "scripts" contain scripts for jupyter or colab (.ipynb format) There are three branches with source files: meta (for differential expression data as reported by authors), rean (for reanalysed by us data) , AS_lists (lists of differentially expressed genes from the aging signature per publication).

Note, these scripts are functional offline, they were written years ago and need update. I will try to make it more in style of colab with direct access to the source files online. It needs some time to make it.