Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge pull request #601 from Libensemble/release/v_0.7.2
Release/v 0.7.2
- Loading branch information
Showing
193 changed files
with
4,539 additions
and
1,427 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,143 @@ | ||
| name: libEnsemble-CI | ||
| on: [push, pull_request] | ||
| jobs: | ||
| test-libE: | ||
|
|
||
| runs-on: ${{ matrix.os }} | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| os: [ubuntu-16.04, macos-latest] | ||
| python-version: [3.6, 3.7, 3.8, 3.9] | ||
| comms-type: [m, l, t] | ||
| exclude: | ||
| - os: macos-latest | ||
| python-version: 3.6 | ||
| - os: macos-latest | ||
| python-version: 3.7 | ||
|
|
||
| env: | ||
| HYDRA_LAUNCHER: 'fork' | ||
| TERM: xterm-256color | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
|
|
||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
|
|
||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - name: Setup conda - Python ${{ matrix.python-version }} | ||
| uses: conda-incubator/setup-miniconda@v2 | ||
| with: | ||
| activate-environment: condaenv | ||
| miniconda-version: "latest" | ||
| python-version: ${{ matrix.python-version }} | ||
| channels: conda-forge | ||
| channel-priority: flexible | ||
| auto-update-conda: true | ||
|
|
||
| - name: Install Ubuntu compilers | ||
| if: matrix.os == 'ubuntu-16.04' | ||
| run: conda install gcc_linux-64 | ||
|
|
||
| # Roundabout solution on macos for proper linking with mpicc | ||
| - name: Install macOS compilers and older SDK | ||
| if: matrix.os == 'macos-latest' | ||
| run: | | ||
| wget https://github.com/phracker/MacOSX-SDKs/releases/download/10.15/MacOSX10.14.sdk.tar.xz | ||
| mkdir ../sdk; tar xf MacOSX10.14.sdk.tar.xz -C ../sdk | ||
| conda install clang_osx-64=9.0.1 | ||
| - name: Install Octave and bc on Ubuntu | ||
| if: matrix.os == 'ubuntu-16.04' | ||
| run: | | ||
| sudo apt-get update | ||
| sudo apt-get install octave | ||
| sudo apt-get install bc | ||
| - name: Install nlopt, scipy, mpich, mpi4py, blas, psutil | ||
| run: | | ||
| conda install nlopt | ||
| conda install scipy | ||
| conda install mpich | ||
| conda install mpi4py | ||
| conda install libblas libopenblas psutil | ||
| - name: Install with-batch PETSc and petsc4py | ||
| if: matrix.python-version == 3.8 | ||
| env: | ||
| PETSC_CONFIGURE_OPTIONS: '--with-batch' | ||
| run: conda install petsc4py | ||
|
|
||
| - name: Install mumps-mpi, PETSc, petsc4py | ||
| if: matrix.python-version != 3.8 | ||
| run: | | ||
| conda install mumps-mpi | ||
| conda install petsc | ||
| conda install petsc4py | ||
| - name: Install DFO-LS, mpmath, deap, other test dependencies | ||
| run: | | ||
| python -m pip install --upgrade pip | ||
| pip install DFO-LS | ||
| pip install mpmath | ||
| pip install deap | ||
| python -m pip install --upgrade git+https://github.com/mosesyhc/surmise.git@development/PCGPwM | ||
| pip install flake8 | ||
| pip install coverage | ||
| pip install pytest | ||
| pip install pytest-cov | ||
| pip install pytest-timeout | ||
| pip install mock | ||
| pip install coveralls | ||
| - name: Install Tasmanian on Ubuntu | ||
| if: matrix.os == 'ubuntu-16.04' | ||
| run: | | ||
| pip install scikit-build packaging Tasmanian --user | ||
| - name: Find MPI, Install libEnsemble, flake8, ulimit adjust | ||
| run: | | ||
| python install/find_mpi.py | ||
| mpiexec --version | ||
| pip install -e . | ||
| flake8 libensemble | ||
| ulimit -Sn 10000 | ||
| - name: Run tests, Ubuntu | ||
| if: matrix.os == 'ubuntu-16.04' | ||
| run: | | ||
| ./libensemble/tests/run-tests.sh -A "-W error" -z -${{ matrix.comms-type }} | ||
| # Uncomment the following 2 lines to enable tmate debug sessions | ||
| # - name: SSH to GitHub Actions | ||
| # uses: P3TERX/ssh2actions@main | ||
|
|
||
| - name: Run tests, macOS | ||
| if: matrix.os == 'macos-latest' | ||
| env: | ||
| CONDA_BUILD_SYSROOT: /Users/runner/work/libensemble/sdk/MacOSX10.14.sdk | ||
| run: | | ||
| ./libensemble/tests/run-tests.sh -A "-W error" -z -${{ matrix.comms-type }} | ||
| - name: Merge coverage, run Coveralls | ||
| env: | ||
| COVERALLS_PARALLEL: true | ||
| run: | | ||
| mv libensemble/tests/.cov* . | ||
| coveralls --service=github | ||
| coveralls: | ||
| name: Notify coveralls of all jobs completing | ||
| needs: test-libE | ||
| if: always() | ||
| runs-on: ubuntu-16.04 | ||
| container: python:3-slim | ||
| steps: | ||
| - name: Finished | ||
| run: | | ||
| pip3 install --upgrade coveralls | ||
| coveralls --finish | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -9,3 +9,9 @@ code/tests/regression_tests/output/ | |
| libensemble.egg-info | ||
| docs/_build | ||
| x.log | ||
|
|
||
| build/ | ||
|
|
||
| dist/ | ||
|
|
||
| .spyproject/ | ||
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.