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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,162 @@ | ||
| name: libEnsemble-simple-CI | ||
|
|
||
| on: | ||
| pull_request: | ||
| types: | ||
| - ready_for_review | ||
| - opened | ||
| - reopened | ||
| - synchronize | ||
|
|
||
| jobs: | ||
| test-libE: | ||
| if: '! github.event.pull_request.draft' | ||
| runs-on: ${{ matrix.os }} | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| os: [ubuntu-latest] | ||
| mpi-version: [mpich] | ||
| python-version: [3.9, "3.10", "3.11"] | ||
| comms-type: [m, l] | ||
| include: | ||
| - os: macos-latest | ||
| python-version: 3.9 | ||
| mpi-version: "mpich=4.0.3" | ||
| comms-type: m | ||
| - os: macos-latest | ||
| python-version: 3.9 | ||
| mpi-version: "mpich=4.0.3" | ||
| comms-type: l | ||
|
|
||
| env: | ||
| HYDRA_LAUNCHER: "fork" | ||
| TERM: xterm-256color | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
|
|
||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
|
|
||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Setup conda - Python ${{ matrix.python-version }} | ||
| uses: conda-incubator/setup-miniconda@v2 | ||
| with: | ||
| activate-environment: condaenv | ||
| miniconda-version: "latest" | ||
| python-version: ${{ matrix.python-version }} | ||
| channels: conda-forge | ||
| channel-priority: flexible | ||
| auto-update-conda: true | ||
|
|
||
| - uses: actions/cache/restore@v3 | ||
| name: Restore cached dependencies | ||
| id: cache | ||
| if: matrix.os == 'ubuntu-latest' | ||
| with: | ||
| path: | | ||
| /home/runner/.local | ||
| /usr/share/miniconda3/envs/condaenv | ||
| /usr/share/miniconda3/bin | ||
| /usr/share/miniconda3/lib | ||
| /usr/share/miniconda3/include | ||
| key: libe-${{ github.ref_name }}-${{ matrix.python-version }}-${{ matrix.comms-type }} | ||
|
|
||
| - name: Force-update certifi | ||
| run: | | ||
| python --version | ||
| pip install -I --upgrade certifi | ||
| - name: Install Ubuntu compilers | ||
| if: matrix.os == 'ubuntu-latest' | ||
| run: conda install gcc_linux-64 | ||
|
|
||
| # Roundabout solution on macos for proper linking with mpicc | ||
| - name: Install macOS compilers and older SDK | ||
| if: matrix.os == 'macos-latest' | ||
| run: | | ||
| wget https://github.com/phracker/MacOSX-SDKs/releases/download/11.3/MacOSX10.15.sdk.tar.xz | ||
| mkdir ../sdk; tar xf MacOSX10.15.sdk.tar.xz -C ../sdk | ||
| conda install clang_osx-64 | ||
| - name: Install basic testing/feature dependencies | ||
| run: | | ||
| pip install -r install/testing_requirements.txt | ||
| pip install -r install/misc_feature_requirements.txt | ||
| - name: Install mpi4py and MPI from conda | ||
| if: (matrix.python-version != '3.10' && matrix.os == 'ubuntu-latest') || matrix.os == 'macos-latest' | ||
| run: | | ||
| conda install mpi4py ${{ matrix.mpi-version }} | ||
| - name: Install mpi4py from pip, MPI from conda, get testing/feature deps | ||
| if: matrix.python-version == '3.10' && matrix.os == 'ubuntu-latest' | ||
| run: | | ||
| conda install ${{ matrix.mpi-version }} | ||
| pip install mpi4py | ||
| - name: Install generator dependencies | ||
| if: matrix.os != 'windows-latest' && steps.cache.outputs.cache-hit != 'true' | ||
| run: | | ||
| python -m pip install --upgrade pip | ||
| pip install mpmath | ||
| conda install numpy nlopt scipy | ||
| - uses: actions/cache/save@v3 | ||
| name: Save dependencies to cache | ||
| if: matrix.os == 'ubuntu-latest' | ||
| with: | ||
| path: | | ||
| /home/runner/.local | ||
| /usr/share/miniconda3/envs/condaenv | ||
| /usr/share/miniconda3/bin | ||
| /usr/share/miniconda3/lib | ||
| /usr/share/miniconda3/include | ||
| key: libe-${{ github.ref_name }}-${{ matrix.python-version }}-${{ matrix.comms-type }} | ||
|
|
||
| - name: Install libEnsemble, flake8, lock environment | ||
| run: | | ||
| pip install -e . | ||
| flake8 libensemble | ||
| - name: Run simple tests, Ubuntu | ||
| if: matrix.os == 'ubuntu-latest' | ||
| run: | | ||
| ./libensemble/tests/run-tests.sh -A "-W error" -z -${{ matrix.comms-type }} | ||
| - name: Run simple tests, macOS | ||
| if: matrix.os == 'macos-latest' | ||
| env: | ||
| CONDA_BUILD_SYSROOT: /Users/runner/work/libensemble/sdk/MacOSX10.15.sdk | ||
| run: | | ||
| ./libensemble/tests/run-tests.sh -A "-W error" -z -${{ matrix.comms-type }} | ||
| - name: Merge coverage, run Coveralls | ||
| env: | ||
| COVERALLS_PARALLEL: true | ||
| run: | | ||
| mv libensemble/tests/.cov* . | ||
| coveralls --service=github | ||
| coveralls: | ||
| name: Notify coveralls of all jobs completing | ||
| needs: [test-libE] | ||
| if: '! github.event.pull_request.draft' | ||
| runs-on: ubuntu-latest | ||
| container: python:3-slim | ||
| steps: | ||
| - name: Finished | ||
| run: | | ||
| pip3 install --upgrade coveralls | ||
| coveralls --finish | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
|
|
||
| spellcheck: | ||
| name: Spellcheck release branch | ||
| if: contains(github.base_ref, 'develop') | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - uses: crate-ci/typos@v1.16.17 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,8 +1,14 @@ | ||
| [default] | ||
| extend-ignore-identifiers-re = [ | ||
| ".*NDArray.*", | ||
| "8ba9de56.*" | ||
| ] | ||
|
|
||
| [default.extend-words] | ||
| als = "als" | ||
| datas = "datas" | ||
| numer = "numer" | ||
| inout = "inout" | ||
|
|
||
| [files] | ||
| extend-exclude = ["*.bib", "*.xml"] | ||
| extend-exclude = ["*.bib", "*.xml", "docs/nitpicky"] |
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