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Develop #176

Merged
merged 441 commits into from
May 23, 2019
Merged

Develop #176

merged 441 commits into from
May 23, 2019

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jmlarson1
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@jmlarson1 jmlarson1 commented May 22, 2019 •
edited by shuds13

Pull request for v0.5.0

Closes #171

shuds13 and others added 30 commits March 20, 2019 22:01
@shuds13
Add Theta Balsam (MPI) submission script
ffccc56
@shuds13
Update readme for forces test
fb9513f
@shuds13
Update readme for forces test
64b6cf2
@shuds13
Send kill_rate and particle_variance in sim_specs (forces test)
aee0fc4
@shuds13
Merge pull request #140 from Libensemble/testing/extend_forces_test
facd885 
Testing/extend forces test
@shuds13
Fix so jobs listed only when job list is not empty
a63705b
@shuds13
Add auto-detection for aprun and jsrun launchers
4b635b1
@shuds13
Update forces calling script to run MPI or multiprocessing
14111bb
@shuds13
Fix to mpi launcher code
a6764ce
@shuds13
Merge pull request #141 from Libensemble/feature/add_aprun_jsrun
0284b49 
Feature/add aprun jsrun
@shuds13
Add re-try launch mechanism to MPI job controller
5a28f47
@shuds13
Restructure wait_on_run for when job is polled as finished
e196905
@shuds13
Make sure launch time is set when start timer in wait_on_run
97d83c2
@shuds13
Make sure launch time is set in same condition as start timer and set…
e138d02 
… max attempts to 5
@shuds13
Print error codes when catch failures and increase retry delay
509ef82
@jmlarson1
Updating declaration of pounders function for PETSc 3.11
e77bad0
@jmlarson1
Testing for PETSc 3.11 interface (and reverting to the old version wh…
87b6b4e 
…ich is being used in conda's build of petsc4py)
@jmlarson1
Merge pull request #144 from Libensemble/feature/retry_on_fail
b153fbd 
Feature/retry on fail
@jmlarson1
Only setting up logger once, seems to solve the issue with multiple l…
73cd467 
…ibE calls being slow
@jmlarson1
Fixing how batched work is given back to persistent workers; introduc…
e626ea6 
…ing gen_time field, which can be used for distiguishing batches (and timing)
@jmlarson1
Removing deprecated use of 'message' in pytest
30cc860
@jmlarson1
Noting new field 'gen_time' in user_guide
dcfbe84
@shuds13
First pass at updating autoresources.
86f4b0d 
To work with MPI and multi-processing.
Tested on laptop, Theta, Bebop.
Some questions to resolve.
@shuds13
Clean node_resources.py a bit
49b26f9
@shuds13
Fix typo in mpi_resources.py
d57ead2
@shuds13
Remove prefix/padding from COBALT nodelist
ceb0613
@shuds13
Make cores optional in forces_simf
171fabe
@shuds13
Merge pull request #145 from Libensemble/hotfix/giving_back_batches_t…
0d8b24f 
…o_persistent_workers

Hotfix/giving back batches to persistent workers
@jmlarson1
Testing that persistent gen_f points are produced in two batches
6ac2757
@jmlarson1
Deleting broken link
6bcb0de
jmlarson1 and others added 20 commits May 21, 2019 07:37
@jmlarson1
Edits to the release notes, including an important 'not'
074f1c9
@jmlarson1
e.g., usage
37cf959
@jmlarson1
Linewrapping
4760bdb
@jmlarson1
Flake8 comment-out
50ca71f
@jmlarson1
Merge pull request #172 from Libensemble/docs/update_for_v0.5.0
4f7cc47 
Docs/update for v0.5.0
@shuds13
Fix balsam runtime calculation
15f9794
@shuds13
Make forces cleanup remove pickle dumps
cea9791
@shuds13
Add balsam_local.sh script to run forces test locally with balsam
4acca51
@shuds13
Merge pull request #173 from Libensemble/feature/fixup_balsam
4021c2b 
Feature/fixup balsam
@shuds13
Try python 3.6
597734f
@shuds13
Try python 3.6 with updated env
8cad480
@shuds13
Merge pull request #174 from Libensemble/feature/testing_docs
c41823a 
Feature/testing docs
@shuds13
Remove dependencies
90ae1eb
@shuds13
Add paths for comms and util directory
d27a8ec
@shuds13
Add setup_py_install: true
a81e38a
@shuds13
Add __init__.py to subpackages comms and util
3b3e48c
@shuds13
Adding comms and util as packages in setup.py
2c1b388
@shuds13
Last one built with no install_requires - add back numpy
5b0afbd
@shuds13
typo
5dd703d
@jmlarson1
Merge pull request #175 from Libensemble/feature/testing_docs
80c5e22 
Feature/testing docs
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coveralls commented May 22, 2019 •
edited

Coverage Status

Coverage increased (+1.5%) to 90.759% when pulling c47505e on develop into 22286ad on master.

@shuds13 shuds13 merged commit c140597 into master May 23, 2019
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Release v0.5.0
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@jmlarson1 @coveralls @shuds13