Genomics analyses of PTHS mouse models investigating interneuron populations. by BaDoi Phan (@ badoi dot phan at pitt dot edu)
The Tasic_2018_mouse_single-cell folder contains scripts to perform
- Cell type-specific expression analyses
- Cell type deconvolution analyses
0a. Download script to grab Tasic et al 2018, Nature
0b. Script to tidy Tasic et al data into R and Bioconductor
3a. Script to prepare bulk and scRNA data for deconvolution analyses
3a. Script to perform deconvolution of bulk RNA-seq samples with scRNA-seq markers
The Tasic_2018_mouse_single-cell/plots folder contains source plots for CSEA and deconvolution figures. The Tasic_2018_mouse_single-cell/tables folder contains numerical and tables underlying the figures.