Skip to content

LieberInstitute/VistoSeg

main
Switch branches/tags

Name already in use

A tag already exists with the provided branch name. Many Git commands accept both tag and branch names, so creating this branch may cause unexpected behavior. Are you sure you want to create this branch?
2 branches 1 tag
Code

Latest commit

 

Git stats

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
.github/workflows
 
 
code
 
 
images
 
 
pipeline_outputs
 
 
.gitignore
 
 
LICENSE
 
 
README.md
 
 
Step1.Rmd
 
 
Step2.Rmd
 
 
Step3.Rmd
 
 
Step4.Rmd
 
 
Step5.Rmd
 
 
VistoSeg.Rproj
 
 
XX-Rinfo.Rmd
 
 
icon_192.png
 
 
icon_32.png
 
 
index.Rmd
 
 
VistoSeg Internal

README.md

VistoSeg

DOI

Welcome to VistoSeg!

This repository describes steps to run Image processing on Visium histology images for Spatial transcriptomics. You can see the documentation at http://research.libd.org/VistoSeg.

Internal

JHPCE location: /dcs04/lieber/lcolladotor/spatialDLPFC_LIBD4035/VisiumLIBD

About

Image processing pipeline for spatial projects

research.libd.org/VistoSeg/

Topics

matlab spatial transcriptomics visium

Resources

Readme

License

GPL-3.0 license
Activity

Stars

13 stars

Watchers

11 watching

Forks

3 forks
Report repository

Releases 1

First public version, ready to be pre-printed Latest
Aug 3, 2021

Packages

No packages published

Contributors 2

  •  
  •  

Languages