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[Segmentation] Added generalized dice score metric #1090

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merged 80 commits into from
Apr 23, 2024

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jlcsilva
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What does this PR do?

Fixes #1089 . Didn't manage to make it work for multidimensional multilabel scenarios. However, that shouldn't a very common use case.

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@Borda
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Borda commented Jun 17, 2022

I beilve that this shall be automatically resolved in cmd by git merge upstream/master

@jlcsilva
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I beilve that this shall be automatically resolved in cmd by git merge upstream/master

I tried that, but got merge: upstream/master - not something we can merge. Any tips? I searched the error, but I'm a bit of a git rookie, so I'm afraid I'll break stuff instead of fixing it 😅

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Borda commented Jun 20, 2022

@jlcsilva shall be resolved now, pls check if I did not make a mistake... 🐰

@mergify mergify bot removed the has conflicts label Jun 20, 2022
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codecov bot commented Jun 20, 2022

Codecov Report

Merging #1090 (bd375c0) into master (82ab513) will decrease coverage by 35%.
The diff coverage is 87%.

Additional details and impacted files
@@           Coverage Diff            @@
##           master   #1090     +/-   ##
========================================
- Coverage      69%     33%    -35%     
========================================
  Files         307     311      +4     
  Lines       17427   17527    +100     
========================================
- Hits        11989    5849   -6140     
- Misses       5438   11678   +6240     

@Borda Borda added this to the v0.10 milestone Jun 20, 2022
@jlcsilva
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@jlcsilva shall be resolved now, pls check if I did not make a mistake... 🐰

Seems ok to me.

Also, I know why the tests are failing, but I'm unsure about what to do. In the file tests/unittests/classification/inputs.py
I changed the data type of some input tensors, such as _input_binary, from int to float, to match the description here. Since the tests are failing, I'm not sure what's wrong, the documentation or the code. Any thoughts from someone with a better overall view of the repo?

@SkafteNicki
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Hi @jlcsilva, when looking at the changes in the PR there also seems to be some changes to other metrics. Any particular reason for this?

@justusschock
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@SkafteNicki I believe they are coming from resolving the merge conflicts

@jlcsilva
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Hi @jlcsilva, when looking at the changes in the PR there also seems to be some changes to other metrics. Any particular reason for this?

In the StatScore class I added the None option for the reduce argument, which I needed for my generalized dice score implementation, and changed its documentation and that of its subclasses accordingly. Additionally, I corrected some typos and added some missing information to these classes' documentation.

Finally, I changes the data type of some test inputs to match that in the general input type documentation page, and added new multidimensional input tensors. To me, this seems to be what is making the code fail the tests. Currently, I'm out of office, but I'll check it as soon as I go back to work

@mergify mergify bot removed the has conflicts label Apr 12, 2024
@SkafteNicki SkafteNicki changed the title Added generalized dice score metric [Segmentation] Added generalized dice score metric Apr 12, 2024
@SkafteNicki SkafteNicki marked this pull request as draft April 12, 2024 14:39
@SkafteNicki SkafteNicki marked this pull request as ready for review April 23, 2024 08:54
@mergify mergify bot added the ready label Apr 23, 2024
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So happy to see it landing 🤩

@Borda Borda enabled auto-merge (squash) April 23, 2024 11:43
@Borda Borda merged commit 745c471 into Lightning-AI:master Apr 23, 2024
61 of 62 checks passed
Segmentation automation moved this from In progress to Done Apr 23, 2024
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Generalized Dice Score
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