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FastTree
Wuming Gong edited this page Mar 28, 2021
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Source: http://www.microbesonline.org/fasttree/
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7. FastTree is open-source software -- you can download the code here.