Merge branch 'master' into issue-57-sept

.travis.yml

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+###############################################################################
+# (C) Copyright IBM Corp. 2019
+#
+# SPDX-License-Identifier: Apache-2.0
+###############################################################################     
+
+# HELP / USEFUL NOTES: 
+# 
+# **SKIPPING BUILD via Travis** 
+#   To skip the build use: 
+#   [skip <KEYWORD>]
+#   ci, travis, travis ci, travis-ci, or travisci
+#   Example: [skip travis] Update README
+# 
+# Job Lifecycle https://docs.travis-ci.com/user/job-lifecycle/
+
+# Build Status 
+# [![Build Status](https://travis-ci.com/IBM/FHIR.svg?branch=master)](https://travis-ci.com/IBM/FHIR)
+
+# Environment Variables 
+# https://docs.travis-ci.com/user/environment-variables/#convenience-variables
+
+# Dist Limits - https://docs.travis-ci.com/user/reference/overview/
+
+# To encrypt the FHIR_GITHUB_TOKEN
+# $ travis endpoint --set-default -X -e https://api.travis-ci.com
+# $ travis login -X -e https://api.travis-ci.com -g <GITHUB_TOKEN>
+# $ travis encrypt FHIR_GITHUB_TOKEN=<NOT_TRUE> --add env.FHIR_GITHUB_TOKEN
+# 
+# Switched to travis encrypt <VALUE OF TOKEN> 
+# 
+# no output, just stores in the .travis.yml (formatting is kind of messy)
+# update env -> global -> secure:
+
+################################################################################################################
+# Define the environment variables in this block: 
+env:
+  global:
+    - BINTRAY_REPO_OWNER="ibm-watson-health"
+    - BINTRAY_REPO_NAME="fhir"
+    # Packages need to be updated as a list. 
+    - BINTRAY_PKG_NAME="com.ibm.fhir:pkg"
+    # IBM Java 8
+    - IBM_JAVA_8_SHASUM="bc53faf476655e565f965dab3db37f9258bfc16bb8c5352c93d43d53860b79d3"
+    - IBM_JAVA_8_URI="https://public.dhe.ibm.com/ibmdl/export/pub/systems/cloud/runtimes/java/8.0.5.40/linux/x86_64/ibm-java-sdk-8.0-5.40-x86_64-archive.bin"
+
+################################################################################################################
+# Setup the basics (distribution/addon/jdk/java)
+language: java
+
+# Setup the distribution with git-lfs addon
+# packages are installed in before_install 
+# details on image https://docs.travis-ci.com/user/reference/bionic/#jvm-clojure-groovy-java-scala-images
+dist: bionic
+
+# Use JDKs per https://github.com/IBM/FHIR/wiki/Setting-up-for-development
+# switch to 'trusty' to enable openjdk8 - https://docs.travis-ci.com/user/reference/trusty/#jvm-clojure-groovy-java-scala-images
+jdk:
+- openjdk11
+
+# Matrix build (just incase we choose)
+matrix: 
+  fast_finish: true
+
+################################################################################################################
+# GIT Settings: 
+branches:
+  except:
+  - gh-pages
+
+################################################################################################################
+# Build
+
+# IBM Java SDK 
+# - Passes to the download function so it can cache. 
+# Reference: https://public.dhe.ibm.com/ibmdl/export/pub/systems/cloud/runtimes/java/meta/sdk/linux/x86_64/index.yml 
+before_install:
+  - sudo apt-get update || true
+  - sudo apt-get install git-lfs 
+  - | 
+    # Travis Event must be push before we download. 
+    if [[ $TRAVIS_EVENT_TYPE == "push" && $TRAVIS_TAG != "" ]]; then 
+      bash build/git-build.sh 'download-java' download "${IBM_JAVA_8_SHASUM}" "${IBM_JAVA_8_URI}"
+    fi
+
+    # Identify that it's a tag build and only push to github when tagged. 
+    BUILD_JDK_VERSION="$(java -version | grep -i 'openjdk version')"
+    echo "JDK VERSION (field used for tagged builds) -> ${BUILD_JDK_VERSION}"
+
+# Not used, really stuffed in the following 'script' block
+# install:
+#  - java -version
+
+# originally using stages, it spins up many worker threads. 
+# in this case, we've opted for conditional usage using BASH scripts. 
+# URL - https://github.com/travis-ci/travis-conditions and https://docs.travis-ci.com/user/environment-variables/ 
+# these are useful. 
+script: 
+  - | 
+    # if you are debugging set `env` 
+    # pull-request
+    # Don't build on forks and only on Git Pull Requests
+  - |
+    if [[ "${TRAVIS_PULL_REQUEST_BRANCH}" != "" && "${TRAVIS_EVENT_TYPE}" == "pull_request"  && "${TRAVIS_PULL_REQUEST}" != "false" ]]; then 
+      bash build/git-build.sh 'pull-request' setup 
+      bash build/git-build.sh 'pull-request' build_install "fhir-examples/pom.xml -P jenkins" "fhir-examples" 
+      bash build/git-build.sh 'pull-request' build_install "fhir-tools/pom.xml -P jenkins" "fhir-tools" 
+      bash build/git-build.sh 'pull-request' build_install "fhir-parent/pom.xml -N" "fhir-parent" 
+      bash build/git-build.sh 'pull-request' build_install "fhir-parent/pom.xml -P jenkins -Dcom.ibm.watsonhealth.fhir.model.spec.test.R4ExamplesDriver.testType=MINIMAL" "fhir-parent" 
+    fi
+  # tag-release
+  # tag-release builds on the tag (it'll checkout the tag, not master)
+  # openjdk 11 -> version we run tags. 
+  - | 
+    if [[ $TRAVIS_EVENT_TYPE == "push" && $TRAVIS_TAG != "" ]]; then 
+      bash build/git-build.sh 'tag' setup 
+      bash build/git-build.sh 'tag' set_version "fhir-examples/pom.xml" "fhir-examples" "${TRAVIS_TAG}" 
+      bash build/git-build.sh 'tag' set_version "fhir-tools/pom.xml" "fhir-tools" "${TRAVIS_TAG}" 
+      bash build/git-build.sh 'tag' build_install "fhir-parent/pom.xml -N" "fhir-parent" 
+      bash build/git-build.sh 'tag' set_version "fhir-parent/pom.xml" "fhir-parent" "${TRAVIS_TAG}" 
+      # "[Build]" 
+      bash build/git-build.sh 'tag' build_install "fhir-examples/pom.xml -P jenkins" "fhir-examples" 
+      bash build/git-build.sh 'tag' build_install "fhir-tools/pom.xml -P jenkins" "fhir-tools" 
+      # '[Next submits the fhir-parent, so references are complete in subsequent build actions]' 
+      bash build/git-build.sh 'tag' build_install "fhir-parent/pom.xml -N" "fhir-parent" 
+      bash build/git-build.sh 'tag' build_install "fhir-parent/pom.xml -P jenkins -Dcom.ibm.watsonhealth.fhir.model.spec.test.R4ExamplesDriver.testType=MINIMAL" "fhir-parent" 
+      # Regression
+      # Runs on the IBM JDK 
+      bash build/git-build.sh 'tag' regression "fhir-parent/pom.xml -P jenkins -Dcom.ibm.watsonhealth.fhir.model.spec.test.R4ExamplesDriver.testType=MINIMAL" "fhir-parent" 
+      # '[Check Security Signatures]' 
+      bash build/git-build.sh 'tag' build_security_check "fhir-parent/pom.xml" "fhir-parent" 
+      # '[JavaDoc and Source Jar]' 
+      bash build/git-build.sh 'tag' build_source_javadoc "fhir-examples/pom.xml" "fhir-examples" 
+      bash build/git-build.sh 'tag' build_source_javadoc "fhir-tools/pom.xml" "fhir-tools" 
+      travis_wait 30 bash build/git-build.sh 'tag' build_source_javadoc "fhir-parent/pom.xml" "fhir-parent" 
+    fi
+   
+after_failure:
+  # outputs the diagnostic details for travis 
+  - bash build/git-build.sh 'diag' diagnostics
+  # dumps our log directory 
+  - cat build/logs/diag.log
+  - bash build/git-build.sh 'failure-comment' comment_on_pull_request_with_log "\ud83d\udc4e <b>FAIL</b> - Tested using <i>${TRAVIS_JDK_VERSION}</i>"
+
+# Report back the status comment for the build type. 
+after_success: 
+  - bash build/git-build.sh 'success-comment' comment_on_pull_request "\ud83d\udc4d <b>PASS</b>  - Tested using <i>${TRAVIS_JDK_VERSION}</i>"
+
+# cache the build files
+cache:
+  directories:
+  - $HOME/.m2
+# Option not to not cache ibm-java
+#  - $HOME/ibm-java
+
+# Send out the build whenb it's a tag build
+deploy:
+  - provider: bintray
+    file: bintray-config.json
+    user: $BINTRAY_USER
+    key:  "FAILME$BINTRAY_APIKEY"
+    skip_cleanup: true
+    on:
+      tags: true
+      jdk: openjdk11
+  - provider: releases
+    api_key: $GITHUB_OAUTH_TOKEN
+    file_glob: true
+    file: target/*.jar
+    skip_cleanup: true
+    on:
+      tags: true
+      jdk: openjdk11
+  - provider: script
+    script: "./build/push-javadoc-to-gh-pages.sh"
+    skip_cleanup: true
+    on:
+      tags: true
+      jdk: openjdk11
+
+#
+# Ask bintray to sync the just-deployed artifact to maven central
+after_script:
+- '[ "${TRAVIS_TAG}" != "" && "${BUILD_JDK_VERSION}" == *"openjdk version \"11.0"* ] 
+  && bash build/sync2MC.sh $BINTRAY_USER $BINTRAY_APIKEY $BINTRAY_REPO_OWNER $BINTRAY_REPO_NAME $BINTRAY_PKG_NAME $TRAVIS_TAG'
+
+notifications:
+  email:
+    recipients: 
+      - pbastide@us.ibm.com, lmsurpre@us.ibm.com
+    on_success: never # default: change
+    on_failure: always # default: always  
+
+# EOF

build/.gitignore

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+logs/

build/bintray-config.template

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+{
+  "package": {
+    "vcs_url": "https://github.com/IBM/FHIR.git",
+    "repo": "${BINTRAY_REPO_NAME}",
+    "issue_tracker_url": "https://github.com/IBM/FHIR/issues",
+    "subject": "${BINTRAY_REPO_OWNER}",
+    "website_url": "https://github.com/IBM/FHIR",
+    "name": "${BINTRAY_PKG_NAME}"
+  },
+
+  "version": {
+    "name": "${TRAVIS_TAG}"
+  },
+
+  "files": [
+    {
+      "includePattern": "target/fhir-${TRAVIS_TAG}.jar",
+      "uploadPattern": "com/ibm/fhir/${TRAVIS_TAG}/fhir-core-${TRAVIS_TAG}.jar"
+    },
+    {
+      "includePattern": "target/fhir-${TRAVIS_TAG}-sources.jar",
+      "uploadPattern": "com/ibm/fhir${TRAVIS_TAG}/fhir-core-${TRAVIS_TAG}-sources.jar"
+    },
+    {
+      "includePattern": "target/fhir-${TRAVIS_TAG}-javadoc.jar",
+      "uploadPattern": "com/ibm/fhir${TRAVIS_TAG}/fhir-${TRAVIS_TAG}-javadoc.jar"
+    },
+    {
+      "includePattern": "pom.xml",
+      "uploadPattern": "com/ibm/fhir${TRAVIS_TAG}/fhir-core-${TRAVIS_TAG}.pom"
+    }
+  ],
+
+  "publish": true
+}