GitHub - LiorKirsch/brain-heatmap: Create heatmaps for the mouse brain and for the human brain

In exampleMain.m you will find an example on how to use the script (from matlab). You can use this script and fit it to your needs.

Matlab will generate a csv file which holds the region ID and the desired color of the region in hex.

Then run the python (tested on python2.7) script to generate the heatmaps.

The python script will load the colors from the csv file.
Then it will modify the atlas svg-images and save the new images to the output folder.

If you enconter problems while running the python script try install beautiful soup http://www.crummy.com/software/BeautifulSoup/bs4/doc/#installing-beautiful-soup

Name		Name	Last commit message	Last commit date
Latest commit History 28 Commits
brodmann_human_atlas_svg		brodmann_human_atlas_svg
bs4		bs4
developing_human_atlas_svg		developing_human_atlas_svg
human_atlas_svg		human_atlas_svg
mouse_atlas_svg		mouse_atlas_svg
ontology		ontology
output_folder		output_folder
.gitignore		.gitignore
.project		.project
.pydevproject		.pydevproject
README.md		README.md
ajax-loader.gif		ajax-loader.gif
brodmann_human_output.csv		brodmann_human_output.csv
colorRegions.m		colorRegions.m
colorTripletToHex.m		colorTripletToHex.m
colorize.py		colorize.py
exampleMain.m		exampleMain.m
idStructMapping.json		idStructMapping.json
mapValuesToColorScale.m		mapValuesToColorScale.m
temp.m		temp.m
test.html		test.html
webtoolkit.base64.js		webtoolkit.base64.js

LiorKirsch/brain-heatmap