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restructure
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GertjanBisschop committed Sep 12, 2023
1 parent 93e9e0f commit 2e215f9
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2 changes: 1 addition & 1 deletion cli/interface.py → gimbleprep/interface.py
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from timeit import default_timer as timer

RUNNER_BY_MODULE = {
'preprocess': 'cli.preprocess',
'preprocess': 'gimbleprep.preprocess',
}
MODULES = RUNNER_BY_MODULE.keys()

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2 changes: 1 addition & 1 deletion cli/preprocess.py → gimbleprep/preprocess.py
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-h, --help Show this
"""

import lib.runargs
import gimbleprep.runargs
import numpy as np
import tempfile
import pathlib
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Empty file removed lib/__init__.py
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9 changes: 4 additions & 5 deletions setup.py
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setup(
name='gimbleprep',
version='0.0.2b3',
version='0.0.2b4',
description='Preprocess fasta, bam and vcf files ready to be used by gimble',
url='http://github.com/LohseLab/gimbleprep',
author='Lohse Lab',
author_email='',
license='GPLv3',
packages=["cli", "lib"],
packages=["gimbleprep"],
package_dir={
"": ".",
"cli": "./cli",
"lib": "./lib",
"gimbleprep": "./gimbleprep",
},
install_requires=[
"docopt",
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],
entry_points={
'console_scripts': [
'gimbleprep = cli.interface:main',
'gimbleprep = gimbleprep.interface:main',
]
}
)

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