Merge pull request #10 from GertjanBisschop/add_setup

add dependencies
LohseLab · Sep 6, 2023 · 61f6c3c · 61f6c3c
2 parents 92e1652 + 5419d33
commit 61f6c3c
Showing 1 changed file with 20 additions and 0 deletions.
diff --git a/setup.py b/setup.py
@@ -1,10 +1,30 @@
 from setuptools import setup
 
 setup(
+    name='gimbleprep',
+    version='0.0.2b2',
+    description='Preprocess fasta, bam and vcf files ready to be used by gimble',
+    url='http://github.com/LohseLab/gimbleprep',
+    author='Lohse Lab',
+    author_email='',
+    license='GPLv3',
     packages=["cli", "lib"],
     package_dir={
         "": ".",
         "cli": "./cli",
         "lib": "./lib",
     },
+    install_requires=[
+        "docopt",
+        "numpy",
+        "pandas",
+        "parallel",
+        "pysam",
+        "tqdm",
+        "bedtools",
+        "bcftools",
+        "samtools",
+        "vcflib",
+        "mosdepth=0.3.2"
+    ]
 )